Pre_GI: BLASTP Hits

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Query: NC_010322:583842:599225 Pseudomonas putida GB-1 chromosome, complete genome

Start: 599225, End: 600571, Length: 1347

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011894:3988500:3998305399830539996481344Methylobacterium nodulans ORS 2060, complete genomehypothetical protein2e-121436
NC_015947:223184:2332732332732346131341Burkholderia sp. JV3 chromosome, complete genomehypothetical protein6e-93341
NC_002695:1929215:1937097193709719384881392Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-55217
NC_002655:2142587:2148677214867721500681392Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded within prophage CP-933R2e-55217
NC_014100:449541:4607844607844621301347Caulobacter segnis ATCC 21756 chromosome, complete genomehypothetical protein6e-52205
NC_009439:4404942:4414352441435244157521401Pseudomonas mendocina ymp, complete genomehypothetical protein2e-49197
NC_011894:7109374:7122706712270671240671362Methylobacterium nodulans ORS 2060, complete genomehypothetical protein1e-46187
NC_011894:5056901:5063252506325250646791428Methylobacterium nodulans ORS 2060, complete genomehypothetical protein4e-44179
NC_010723:2082750:2086875208687520879991125Clostridium botulinum E3 str. Alaska E43, complete genomehypothetical protein2e-31137
NC_007964:2762000:276622027662202767173954Nitrobacter hamburgensis X14, complete genomehypothetical protein4e-28126
NC_010322:583842:6020856020856038061722Pseudomonas putida GB-1 chromosome, complete genomehypothetical protein1e-20101
NC_014100:449541:4579234579234596471725Caulobacter segnis ATCC 21756 chromosome, complete genome2e-1687
NC_015666:2224717:2233667223366722359522286Halopiger xanaduensis SH-6 chromosome, complete genomehypothetical protein1e-0965.1