Pre_GI: BLASTP Hits

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Query: NC_010322:583842:598260 Pseudomonas putida GB-1 chromosome, complete genome

Start: 598260, End: 599159, Length: 900

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011894:3988500:399732739973273998301975Methylobacterium nodulans ORS 2060, complete genomehypothetical protein3e-61235
NC_015947:223184:232314232314233273960Burkholderia sp. JV3 chromosome, complete genomehypothetical protein6e-43174
NC_011894:7109374:712176271217627122706945Methylobacterium nodulans ORS 2060, complete genomehypothetical protein7e-23108
NC_007964:2762000:276757427675742768524951Nitrobacter hamburgensis X14, complete genomehypothetical protein6e-2098.2
NC_014100:449541:459836459836460783948Caulobacter segnis ATCC 21756 chromosome, complete genomehypothetical protein2e-1790.1
NC_002695:1929215:193610819361081937097990Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein7e-1684.7
NC_002655:2142587:215006521500652151057993Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded within prophage CP-933R7e-1684.7
NC_009439:4404942:441574944157494416729981Pseudomonas mendocina ymp, complete genomehypothetical protein6e-1375.1