Pre_GI: BLASTP Hits

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Query: NC_010322:583842:594787 Pseudomonas putida GB-1 chromosome, complete genome

Start: 594787, End: 595062, Length: 276

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017986:2548720:256271225627122563032321Pseudomonas putida ND6 chromosome, complete genomehelix-turn-helix domain-containing protein2e-2098.2
NC_010501:2609567:262073326207332621008276Pseudomonas putida W619, complete genomehelix-turn-helix domain protein3e-2097.1
NC_017986:5797044:581446358144635814777315Pseudomonas putida ND6 chromosome, complete genomePbsX family transcriptional regulator3e-1994
NC_008577:1455000:147510214751021475392291Shewanella sp. ANA-3 chromosome 1, complete sequencetranscriptional regulator, XRE family3e-1890.1
NC_010170:4800000:481912848191284819427300Bordetella petrii, complete genomepredicted transcriptional regulator3e-1890.1
NC_005773:3220500:324109332410933241329237Pseudomonas syringae pv. phaseolicola 1448A, complete genometranscriptional regulator, PbsX family9e-1888.6
NC_011992:1318691:134321513432151343505291Acidovorax ebreus TPSY, complete genomehelix-turn-helix domain protein1e-1788.2
NC_003295:2787371:281222328122232812513291Ralstonia solanacearum GMI1000, complete genomePUTATIVE TRANSCRIPTION REGULATOR PROTEIN1e-1685.1
NC_015381:2859000:289856828985682898861294Burkholderia gladioli BSR3 chromosome 1, complete sequenceXRE family transcriptional regulator2e-1684.7
NC_008752:725189:744058744058744351294Acidovorax avenae subsp. citrulli AAC00-1, complete genometranscriptional regulator, XRE family3e-1684
NC_014540:2828299:284515128451512845447297Burkholderia sp. CCGE1003 chromosome 2, complete sequencehelix-turn-helix domain-containing protein3e-1684
NC_020829:2152000:215225621522562152549294Pseudomonas denitrificans ATCC 13867, complete genomehelix-turn-helix domain-containing protein5e-1682.8
NC_020829:4429435:445048844504884450811324Pseudomonas denitrificans ATCC 13867, complete genometranscriptional regulator2e-1580.9
NC_012560:3667177:367114836711483671384237Azotobacter vinelandii DJ, complete genomeTranscriptional regulator Cro/CI-like protein8e-1475.9
NC_021150:3667176:367114736711473671383237Azotobacter vinelandii CA6, complete genomeTranscriptional regulator Cro/CI-like protein8e-1475.9
NC_009656:3869281:387000838700083870244237Pseudomonas aeruginosa PA7 chromosome, complete genomehelix-turn-helix domain-containing protein1e-1375.1
NC_007951:925442:932331932331932627297Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, XRE family2e-1271.2
NC_007952:3283394:331374433137443314040297Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, XRE family6e-1269.3
NC_012791:2386000:239246023924602392813354Variovorax paradoxus S110 chromosome 1, complete genomehypothetical protein6e-1166.2
NC_015410:2698572:272656427265642726854291Pseudomonas mendocina NK-01 chromosome, complete genomehelix-turn-helix domain-containing protein2e-1064.7
NC_004578:3193490:320831232083123208635324Pseudomonas syringae pv. tomato str. DC3000, complete genomeDNA-binding protein6e-1062.8
NC_010623:1871492:187955318795531879801249Burkholderia phymatum STM815 chromosome 2, complete sequencetranscriptional regulator, XRE family6e-1062.8
NC_010322:4623867:466672646667264667013288Pseudomonas putida GB-1 chromosome, complete genomeXRE family transcriptional regulator2e-0961.6
NC_008358:2638245:269643226964322696641210Hyphomonas neptunium ATCC 15444, complete genomeDNA-binding protein5e-0959.7
NC_002695:5352554:535634053563405356804465Escherichia coli O157:H7 str. Sakai, complete genomeputative transcription regulator5e-0856.6
NC_002655:5382557:538634353863435386807465Escherichia coli O157:H7 EDL933, complete genomehypothetical protein5e-0856.6
NC_011353:5426793:542998854299885430452465Escherichia coli O157:H7 str. EC4115 chromosome, complete genometranscriptional regulator5e-0856.6
NC_013008:5382917:538604953860495386513465Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein5e-0856.6
NC_002947:2157648:218172421817242182032309Pseudomonas putida KT2440, complete genometranscriptional regulator, Cro/CI family1e-0755.5
NC_004578:5336773:539626453962645396704441Pseudomonas syringae pv. tomato str. DC3000, complete genomeDNA-binding protein1e-0755.1
NC_010322:1817598:183312418331241833405282Pseudomonas putida GB-1 chromosome, complete genomeXRE family transcriptional regulator4e-0753.5
NC_014500:894136:905379905379905648270Dickeya dadantii 3937 chromosome, complete genomeMunI regulatory protein7e-0752.8
NC_009667:1934818:194392819439281944158231Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceXRE family transcriptional regulator7e-0752.8
NC_014500:1862000:190350619035061903814309Dickeya dadantii 3937 chromosome, complete genomeMunI regulatory protein8e-0752.4
NC_007946:289425:303574303574304038465Escherichia coli UTI89, complete genomeputative transcription regulator1e-0652
NC_017986:4790482:482408548240854824420336Pseudomonas putida ND6 chromosome, complete genomehelix-turn-helix domain-containing protein3e-0650.8