Pre_GI: BLASTP Hits

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Query: NC_010322:583842:592259 Pseudomonas putida GB-1 chromosome, complete genome

Start: 592259, End: 594328, Length: 2070

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015726:406450:4168814168814189592079Cupriavidus necator N-1 chromosome 1, complete sequenceintegrase0776
NC_015458:2998000:3005609300560930076182010Pusillimonas sp. T7-7 chromosome, complete genomeintegrase family protein0750
NC_020829:636773:6446296446296466111983Pseudomonas denitrificans ATCC 13867, complete genomeintegrase family protein0701
NC_015563:2018038:2028877202887720309462070Delftia sp. Cs1-4 chromosome, complete genomeintegrase family protein9e-134478
NC_014640:6815264:6837004683700468390132010Achromobacter xylosoxidans A8 chromosome, complete genomehypothetical protein1e-117424
NC_009524:1369395:1377817137781713797841968Psychrobacter sp. PRwf-1 chromosome, complete genomehypothetical protein5e-114412
NC_016816:1545354:1555375155537515574082034Pantoea ananatis LMG 5342, complete genomeDNA-binding protein3e-84313
NC_003919:3396136:3406559340655934084091851Xanthomonas axonopodis pv. citri str. 306, complete genomehypothetical protein2e-77291
NC_010067:191190:2029042029042047781875Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein7e-77288
CU928160:4570498:4583846458384645857201875Escherichia coli IAI1 chromosome, complete genomeputative integrase4e-75283
NC_011741:4570498:4583846458384645857201875Escherichia coli IAI1 chromosome, complete genomeputative integrase4e-75283
NC_009436:3117661:3141163314116331430371875Enterobacter sp. 638, complete genomeDNA-binding protein3e-75283
NC_008800:1090000:1101870110187011037291860Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,DNA-binding protein5e-73276
NC_004547:1174650:1189894118989411918581965Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative integrase1e-70268
NC_012917:1840172:1853169185316918548541686Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeDNA-binding protein1e-69265
NC_005773:4282840:4292503429250342943741872Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein4e-63243
NC_014311:3076519:3113502311350231155562055Ralstonia solanacearum PSI07 chromosome, complete genomephage integrase1e-60235
NC_011663:674069:6792846792846813652082Shewanella baltica OS223 chromosome, complete genomehypothetical protein3e-56220
NC_009665:639914:6451236451236472042082Shewanella baltica OS185 chromosome, complete genomehypothetical protein3e-56220
NC_010571:2943369:2953324295332429553392016Opitutus terrae PB90-1, complete genomehypothetical protein4e-54213
NC_014394:2577949:2593443259344325953741932Gallionella capsiferriformans ES-2 chromosome, complete genomehypothetical protein1e-49198
NC_002695:3468873:3494269349426934959001632Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein8e-46185
NC_011353:3573641:3598505359850536001361632Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeDNA-binding protein8e-46185
NC_013008:3525428:3553230355323035548611632Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein8e-46185
NC_013941:3300000:3332001333200133336321632Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDNA-binding protein2e-45184
NC_005773:4899252:4904499490449949067332235Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein2e-45184
NC_020829:940692:9877309877309899672238Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein3e-45183
NC_014562:2563466:2591394259139425932321839Pantoea vagans C9-1 chromosome, complete genomeTransposase B from transposon Tn5542e-44181
NC_004578:5192110:5198455519845552006922238Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein4e-44180
NC_002655:3538656:3561775356177535631871413Escherichia coli O157:H7 EDL933, complete genomehypothetical protein8e-39162
NC_014752:834616:846608846608847522915Neisseria lactamica ST-640, complete genomehypothetical protein1e-35152
NC_008740:2563278:2577558257755825797052148Marinobacter aquaeolei VT8, complete genomehypothetical protein1e-30135
NC_009792:3665369:3685946368594636876131668Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-28129
NC_012880:3421500:3435298343529834369561659Dickeya dadantii Ech703, complete genomehypothetical protein6e-29129
NC_013421:1819036:1852002185200218536211620Pectobacterium wasabiae WPP163, complete genomehypothetical protein2e-28128
NC_020209:1949500:1958027195802719601412115Pseudomonas poae RE*1-1-14, complete genomehypothetical protein3e-27124
NC_006350:595893:6339776339776359321956Burkholderia pseudomallei K96243 chromosome 1, complete sequencehypothetical protein1e-26122
NC_011283:4438500:4459610445961044612411632Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein2e-23111
NC_016514:3573400:3595476359547635968071332Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein5e-23110
NC_014366:478000:4868774868774888862010Gamma proteobacterium HdN1, complete genomeputative integrase2e-1998.6
NC_010506:4873487:4883679488367948859342256Shewanella woodyi ATCC 51908, complete genomehypothetical protein2e-1791.3
NC_004129:3452885:3464703346470334670092307Pseudomonas fluorescens Pf-5, complete genomehypothetical protein1e-1172.4
NC_007510:1959883:2012084201208420144082325Burkholderia sp. 383 chromosome 1, complete sequencehypothetical protein3e-0654.3