Pre_GI: BLASTP Hits

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Query: NC_010322:583842:583842 Pseudomonas putida GB-1 chromosome, complete genome

Start: 583842, End: 584306, Length: 465

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:5367454:538755453875545388018465Pseudomonas syringae pv. syringae B728a, complete genomeBacterioferritin8e-74275
NC_002516:4747154:475166547516654752129465Pseudomonas aeruginosa PAO1, complete genomebacterioferritin5e-69259
NC_009439:4267356:426877942687794269243465Pseudomonas mendocina ymp, complete genomebacterioferritin1e-59228
NC_015556:717993:734279734279734743465Pseudomonas fulva 12-X chromosome, complete genomebacterioferritin2e-59227
NC_010120:1065833:107192610719261072360435Neisseria meningitidis 053442, complete genomebacterioferritin A2e-45180
NC_018679:2412000:241261624126162413083468Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completebacterioferritin4e-45179
NC_007645:6955479:695547969554796955958480Hahella chejuensis KCTC 2396, complete genomebacterioferritin5e-30129
NC_007645:3756654:377280237728023773266465Hahella chejuensis KCTC 2396, complete genomebacterioferritin1e-29128
NC_007963:3225306:322991032299103230389480Chromohalobacter salexigens DSM 3043, complete genomebacterioferritin3e-28123
NC_010681:221416:237119237119237598480Burkholderia phytofirmans PsJN chromosome 1, complete sequencebacterioferritin1e-27122
NC_008390:2448379:246881324688132469289477Burkholderia cepacia AMMD chromosome 1, complete sequencebacterioferritin4e-27120
NC_013716:4728500:474373447437344744210477Citrobacter rodentium ICC168, complete genomebacterioferritin3e-27120
NC_007946:3683371:368407736840773684553477Escherichia coli UTI89, complete genomebacterioferrin6e-27119
NC_016818:362548:372959372959373438480Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completebacterioferritin2e-26117
NC_008009:4421992:444770944477094448194486Acidobacteria bacterium Ellin345, complete genomebacterioferritin3e-26117
NC_008789:942309:960353960353960859507Halorhodospira halophila SL1, complete genomebacterioferritin9e-26115
NC_014909:219498:226985226985227455471Candidatus Blochmannia vafer str. BVAF chromosome, complete genomebacterioferritin2e-25114
NC_013209:2536500:255186825518682552353486Acetobacter pasteurianus IFO 3283-01, complete genomebacterioferritin7e-25112
NC_017100:2538461:255307525530752553560486Acetobacter pasteurianus IFO 3283-03, complete genomebacterioferritin7e-25112
NC_017108:2535798:255041225504122550897486Acetobacter pasteurianus IFO 3283-12, complete genomebacterioferritin7e-25112
NC_017111:2535000:255043025504302550915486Acetobacter pasteurianus IFO 3283-32, complete genomebacterioferritin7e-25112
NC_017121:2535803:255041725504172550902486Acetobacter pasteurianus IFO 3283-07, complete genomebacterioferritin7e-25112
NC_017125:2538441:255305525530552553540486Acetobacter pasteurianus IFO 3283-22, complete genomebacterioferritin7e-25112
NC_017146:2538483:255309725530972553582486Acetobacter pasteurianus IFO 3283-26, complete genomebacterioferritin7e-25112
NC_016027:346768:354606354606355172567Gluconacetobacter xylinus NBRC 3288, complete genomebacterioferritin4e-24110
NC_004556:1933944:194289719428971943361465Xylella fastidiosa Temecula1, complete genomebacterioferritin6e-24109
NC_013440:6045708:605949860594986059968471Haliangium ochraceum DSM 14365, complete genomebacterioferritin8e-24109
NC_007086:557789:582061582061582531471Xanthomonas campestris pv. campestris str. 8004, complete genomebacterioferritin2e-23108
NC_003902:555699:579977579977580447471Xanthomonas campestris pv. campestris str. ATCC 33913, completebacterioferritin2e-23108
NC_005061:214168:220512220512220982471Candidatus Blochmannia floridanus, complete genomebacterioferritin2e-22104
NC_010120:1065833:107142510714251071898474Neisseria meningitidis 053442, complete genomebacterioferritin B1e-21101
NC_018679:2412000:241308324130832413559477Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completeputative glutathione-regulated potassium-efflux system protein3e-21100
NC_014034:995661:100107910010791001564486Rhodobacter capsulatus SB1003 chromosome, complete genomebacterioferritin6e-1889.7
NC_008536:3282971:329545332954533295992540Solibacter usitatus Ellin6076, complete genomebacterioferritin9e-1785.9