Pre_GI: BLASTP Hits

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Query: NC_010322:5349000:5358502 Pseudomonas putida GB-1 chromosome, complete genome

Start: 5358502, End: 5359968, Length: 1467

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:5336773:5381679538167953831031425Pseudomonas syringae pv. tomato str. DC3000, complete genomesite-specific recombinase, phage integrase family7e-127454
NC_015633:2565753:2591438259143825927871350Vibrio anguillarum 775 chromosome chromosome I, complete sequencehypothetical protein3e-56219
NC_010322:1817598:1852561185256118539401380Pseudomonas putida GB-1 chromosome, complete genomeintegrase family protein8e-29128
NC_020209:4312892:433922743392274339952726Pseudomonas poae RE*1-1-14, complete genomephage integrase family protein6e-27122
NC_007951:1042291:1049518104951810510411524Burkholderia xenovorans LB400 chromosome 1, complete sequencehypothetical protein1e-1895.1
NC_009656:6224221:6261451626145162628241374Pseudomonas aeruginosa PA7 chromosome, complete genomesite-specific recombinase, phage integrase family protein2e-1687.4
NC_014377:1227850:123809612380961238995900Thermosediminibacter oceani DSM 16646 chromosome, complete genometyrosine recombinase XerD subunit3e-0653.5
NC_014169:1442435:144352214435221444448927Bifidobacterium longum subsp. longum JDM301 chromosome, completetyrosine recombinase XerD7e-0652.4