Pre_GI: BLASTP Hits

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Query: NC_010322:4623867:4653523 Pseudomonas putida GB-1 chromosome, complete genome

Start: 4653523, End: 4654899, Length: 1377

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013222:229190:2398182398182408641047Robiginitalea biformata HTCC2501, complete genomehypothetical protein2e-1480.5
NC_011729:2732163:2751610275161027527881179Cyanothece sp. PCC 7424 chromosome, complete genomerelaxase7e-1375.9
NC_013941:3300000:3326760332676033279921233Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-1170.5
NC_019744:20500:3706737067384521386Cylindrospermum stagnale PCC 7417 plasmid pCYLST.02, completerelaxase/mobilization nuclease7e-1168.9
NC_013947:326980:3334093334093349411533Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehypothetical protein9e-1168.6
NC_016610:726128:742472742472743413942Tannerella forsythia ATCC 43037 chromosome, complete genomerelaxase/mobilization nuclease domain-containing protein1e-1068.2
NC_007973:3065632:308756730875673088193627Ralstonia metallidurans CH34 chromosome 1, complete sequencehypothetical protein1e-1068.2
NC_010729:1014957:102941310294131030354942Porphyromonas gingivalis ATCC 33277, complete genomeputative mobilization protein1e-0965.1
NC_011283:4438500:4456389445638944576661278Klebsiella pneumoniae 342 chromosome, complete genomerelaxase/mobilization nuclease domain protein2e-0964.7
NC_003240:137907:1453411453411467561416Nostoc sp. PCC 7120 plasmid pCC7120beta, complete sequencehypothetical protein5e-0962.8
NC_016816:1545354:1568538156853815696291092Pantoea ananatis LMG 5342, complete genomerelaxase/mobilization nuclease domain protein5e-0962.8
NC_012559:854507:8833798833798847041326Laribacter hongkongensis HLHK9, complete genomeRelaxase/mobilization nuclease topoisomerase/primase fusion protein8e-0962
NC_009615:2590207:261980826198082620728921Parabacteroides distasonis ATCC 8503 chromosome, complete genomemobilization protein BmgA1e-0862
NC_010547:194500:2072282072282082921065Cyanothece sp. ATCC 51142 chromosome linear, complete sequencehypothetical protein2e-0861.2
NC_009792:3245368:3278160327816032793921233Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein3e-0860.1
NC_004663:1409462:141524214152421416192951Bacteroides thetaiotaomicron VPI-5482, complete genomemobilization protein BmgA5e-0859.3
NC_015571:2002489:202430020243002025226927Porphyromonas gingivalis TDC60, complete genomemobilization protein8e-0858.9
NC_012917:1840172:1861399186139918627331335Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeRelaxase/mobilization nuclease family protein9e-0858.5
NC_009615:3904962:393117639311763932096921Parabacteroides distasonis ATCC 8503 chromosome, complete genomemobilization protein BmgA1e-0758.2
NC_015221:12389:3025430254318881635Nitrosomonas sp. AL212 plasmid pNAL21202, complete sequencerelaxase/mobilization nuclease family protein3e-0757
NC_010694:1052722:107422510742251075052828Erwinia tasmaniensis, complete genomehypothetical protein5e-0756.2
NC_009441:4384500:4405743440574344070381296Flavobacterium johnsoniae UW101 chromosome, complete genomerelaxase/mobilization nuclease7e-0755.8
NC_008537:12500:2593125931275711641Arthrobacter sp. FB24 plasmid 1, complete sequenceRelaxase/mobilization nuclease family protein9e-0755.5
NC_016614:1178000:1186603118660311879911389Vibrio sp. EJY3 chromosome 2, complete sequencetype IV secretory pathway VirD2 component2e-0654.3
NC_004547:1174650:1193409119340911947041296Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein2e-0653.9
NC_014562:2563466:2582727258272725837641038Pantoea vagans C9-1 chromosome, complete genomehypothetical protein4e-0653.1
NC_015311:2626850:2663401266340126644801080Prevotella denticola F0289 chromosome, complete genomerelaxase/mobilization nuclease domain-containing protein7e-0652.4
NC_015277:4358000:4379499437949943807971299Sphingobacterium sp. 21 chromosome, complete genomeRelaxase/mobilization nuclease family protein7e-0652.4