Pre_GI: BLASTP Hits

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Query: NC_010322:29983:52030 Pseudomonas putida GB-1 chromosome, complete genome

Start: 52030, End: 52998, Length: 969

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009512:27783:512485124852216969Pseudomonas putida F1, complete genometranscriptional regulator, LysR family0636
NC_010501:30000:559645596456932969Pseudomonas putida W619, complete genometranscriptional regulator, LysR family0636
NC_002947:8394:392723927240240969Pseudomonas putida KT2440, complete genometranscriptional regulator, putative0635
NC_017986:2548720:258545025854502586418969Pseudomonas putida ND6 chromosome, complete genomeLysR family transcriptional regulator4e-177620
NC_009439:1297851:131398713139871314904918Pseudomonas mendocina ymp, complete genomeLysR family transcriptional regulator7e-35147
NC_009436:2056000:205954820595482060441894Enterobacter sp. 638, complete genomeLysR family transcriptional regulator2e-0756.6
NC_009439:3485000:349808734980873498971885Pseudomonas mendocina ymp, complete genomeLysR family transcriptional regulator4e-0755.8
NC_014539:1839840:185657818565781857489912Burkholderia sp. CCGE1003 chromosome 1, complete sequenceLysR family transcriptional regulator5e-0755.5
NC_009439:3535152:355290635529063553790885Pseudomonas mendocina ymp, complete genomeLysR family transcriptional regulator7e-0755.1
NC_014307:1855356:188089118808911881796906Ralstonia solanacearum CFBP2957 chromosome, complete genomeLysR family transcriptional regulator3e-0653.1
NC_014623:9492000:949901294990129499953942Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeLysR family transcriptional regulator3e-0652.8