Pre_GI: BLASTP Hits

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Query: NC_010322:1817598:1865309 Pseudomonas putida GB-1 chromosome, complete genome

Start: 1865309, End: 1866517, Length: 1209

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006513:2708213:2724179272417927253811203Azoarcus sp. EbN1, complete genomeputative ammonium transporter6e-121434
NC_013959:1059004:1062736106273610639381203Sideroxydans lithotrophicus ES-1 chromosome, complete genomeammonium transporter1e-119430
NC_007404:1776147:1792571179257117937731203Thiobacillus denitrificans ATCC 25259, complete genomeputative ammonium transporter2e-118426
NC_016616:1091606:1094955109495510961601206Dechlorosoma suillum PS chromosome, complete genomeammonia permease1e-116420
NC_014323:625155:6364956364956377001206Herbaspirillum seropedicae SmR1 chromosome, complete genomeammonium transporter transmembrane protein4e-116418
NC_014931:4490526:4504459450445945056611203Variovorax paradoxus EPS chromosome, complete genomeammonium transporter5e-113407
NC_009483:2640403:2660307266030726615271221Geobacter uraniireducens Rf4 chromosome, complete genomeRh family protein/ammonium transporter6e-97354
NC_014122:842560:8573058573058585461242Methanocaldococcus infernus ME chromosome, complete genomeammonium transporter3e-39162
NC_013156:573037:5744045744045755551152Methanocaldococcus fervens AG86, complete genomeammonium transporter1e-31137
NC_013943:2361617:2378144237814423794751332Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomeammonium transporter2e-27123
NC_009614:4918877:4929676492967649310341359Bacteroides vulgatus ATCC 8482 chromosome, complete genomeammonium transporter3e-26119
NC_014933:2525393:2533927253392725353481422Bacteroides helcogenes P 36-108 chromosome, complete genomeammonium transporter3e-26119
NC_007205:60069:6006960069622042136Candidatus Pelagibacter ubique HTCC1062, complete genomeAmmonium transporter family protein3e-25116
NC_015500:484984:4849844849844867261743Treponema brennaborense DSM 12168 chromosome, complete genomeammonium transporter3e-24112
NC_015690:7422911:7440643744064374419321290Paenibacillus mucilaginosus KNP414 chromosome, complete genomeammonium transporter4e-23109
NC_016935:7512884:7530614753061475319031290Paenibacillus mucilaginosus 3016 chromosome, complete genomeammonium transporter4e-23109
NC_007205:60069:6232362323645602238Candidatus Pelagibacter ubique HTCC1062, complete genomeAmmonium transporter family protein3e-23109
NC_009925:6024888:6043838604383860485324695Acaryochloris marina MBIC11017, complete genometwo-component hybrid sensor and regulator histidine kinase5e-23108
NC_013517:599949:6150796150796163471269Sebaldella termitidis ATCC 33386, complete genomeammonium transporter6e-22105
NC_012781:629761:6467086467086484651758Eubacterium rectale ATCC 33656, complete genomeadenylate/guanylate cyclase1e-21104
NC_007645:6500059:6538405653840565396761272Hahella chejuensis KCTC 2396, complete genomeammonium transporter4e-21102
NC_009932:39348:4156741567433811815Acaryochloris marina MBIC11017 plasmid pREB7, complete sequenceammonium transporter1e-20101
NC_018868:2867500:2891195289119528924271233Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeammonium transporter3e-2099.8
NC_020304:256000:2563732563732577281356Desulfocapsa sulfexigens DSM 10523, complete genomeammonium transporter4e-1996.3
NC_013410:2253631:2253631225363122548961266Fibrobacter succinogenes subsp. succinogenes S85 chromosome,ammonium transporter7e-1995.5
NC_014532:110875:1138031138031150441242Halomonas elongata DSM 2581, complete genomeammonium transporter2e-1790.9
NC_007644:161222:1883131883131897161404Moorella thermoacetica ATCC 39073, complete genomeammonium transporter6e-1582.4
NC_018691:4619245:4635167463516746364261260Alcanivorax dieselolei B5 chromosome, complete genomeRh-like protein/ammonium transporter2e-1377.4
NC_015563:334942:3509333509333522851353Delftia sp. Cs1-4 chromosome, complete genomeammonium transporter3e-1376.6
NC_015567:1127780:1132001113200111332871287Serratia sp. AS9 chromosome, complete genomeammonium transporter7e-1375.5
NC_015566:1127595:1131816113181611331021287Serratia sp. AS12 chromosome, complete genomeammonium transporter7e-1375.5
NC_013939:1417750:1432456143245614337121257Deferribacter desulfuricans SSM1, complete genomeammonium transporter Amt family8e-1272
NC_015656:132633:1354911354911367861296Frankia symbiont of Datisca glomerata chromosome, complete genomeammonium transporter9e-1271.6
NC_015318:426707:4282164282164295111296Hippea maritima DSM 10411 chromosome, complete genomeammonium transporter2e-1170.9
NC_020291:6426704:6428110642811064293511242Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeammonium transporter NrgA3e-1170.1
NC_015681:1558873:1559435155943515606491215Thermodesulfatator indicus DSM 15286 chromosome, complete genomeammonium transporter4e-1169.3
NC_006448:465656:4732124732124744951284Streptococcus thermophilus LMG 18311, complete genomeammonium uptake transporter4e-1169.3
NC_016830:6589575:6595264659526465965621299Pseudomonas fluorescens F113 chromosome, complete genomeprotein AmtB5e-1169.3
NC_013385:1882549:1890155189015518914591305Ammonifex degensii KC4, complete genomeammonium transporter6e-1168.9
NC_008532:469888:4774784774784787131236Streptococcus thermophilus LMD-9, complete genomeAmmonia permease8e-1168.6
NC_013204:2955500:2955915295591529571891275Eggerthella lenta DSM 2243, complete genomeammonium transporter2e-1067.4
NC_020304:1977249:1982799198279919840221224Desulfocapsa sulfexigens DSM 10523, complete genomeammonium transporter2e-1067.4
NC_018876:1061682:1061682106168210628781197Methanolobus psychrophilus R15 chromosome, complete genomeammonium transporter2e-1067
NC_009484:429269:4292694292694305701302Acidiphilium cryptum JF-5 chromosome, complete genomeammonium transporter3e-1066.6
NC_013854:330543:3502453502453516871443Azospirillum sp. B510, complete genomeammonium transporter3e-1066.6
NC_012856:207194:2314892314892330631575Ralstonia pickettii 12D chromosome 1, complete genomeammonium transporter8e-1065.1
NC_015318:426707:4267074267074280021296Hippea maritima DSM 10411 chromosome, complete genomeammonium transporter9e-1065.1
NC_010622:249625:3002553002553017601506Burkholderia phymatum STM815 chromosome 1, complete sequenceammonium transporter1e-0965.1
NC_007510:3340008:3341542334154233430561515Burkholderia sp. 383 chromosome 1, complete sequenceAmmonium transporter1e-0964.7
NC_011296:1636242:1636595163659516379381344Thermodesulfovibrio yellowstonii DSM 11347, complete genomeammonium transporter2e-0963.9
NC_008752:261903:2625102625102637301221Acidovorax avenae subsp. citrulli AAC00-1, complete genome5e-0962.4
NC_015138:322386:3267723267723282081437Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeammonium transporter5e-0962.4
NC_014666:7838500:7839782783978278411251344Frankia sp. EuI1c chromosome, complete genomeammonium transporter2e-0860.8
NC_018644:1197897:1201772120177212030491278Alpha proteobacterium HIMB59 chromosome, complete genomeammonium transporter family protein3e-0860.1
NC_014972:2328228:2355197235519723565971401Desulfobulbus propionicus DSM 2032 chromosome, complete genomeammonium transporter5e-0859.3
NC_017068:2569609:2571523257152325728361314Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative ammonium transporter NrgA5e-0859.3
NC_010524:4402478:4418402441840244199161515Leptothrix cholodnii SP-6, complete genomeammonium transporter2e-0757.4
NC_007205:1232734:1245857124585712472571401Candidatus Pelagibacter ubique HTCC1062, complete genomeammonium transporter3e-0756.6
NC_018643:857911:8726708726708740701401Alpha proteobacterium HIMB5 chromosome, complete genomeammonium transporter family protein1e-0655.1
NC_010410:3606826:3606826360682636082231398Acinetobacter baumannii AYE, complete genomeammonium transport protein (Amt family)2e-0653.9
NC_014624:287500:2876222876222888271206Eubacterium limosum KIST612 chromosome, complete genomeputative ammonium transporter family3e-0653.1
NC_017171:280762:2959622959622973591398Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomeammonium transporter5e-0652.4
NC_017162:270460:2935692935692949661398Acinetobacter baumannii 1656-2 chromosome, complete genomeAmmonium transport protein5e-0652.4
NC_010611:240839:2661082661082675051398Acinetobacter baumannii ACICU, complete genomeAmmonia permease5e-0652.4
NC_011586:268927:3283683283683297651398Acinetobacter baumannii AB0057 chromosome, complete genomeammonium transporter5e-0652.4
NC_016616:760145:7643797643797657791401Dechlorosoma suillum PS chromosome, complete genomeammonium transporter6e-0652.4