Pre_GI: BLASTP Hits

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Query: NC_010322:1336231:1353981 Pseudomonas putida GB-1 chromosome, complete genome

Start: 1353981, End: 1356023, Length: 2043

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002947:3404000:3426049342604934280852037Pseudomonas putida KT2440, complete genometerminase, large subunit, putative01186
NC_004129:2201780:2220134222013422221852052Pseudomonas fluorescens Pf-5, complete genometerminase, large subunit01067
NC_004578:3849835:3849835384983538518592025Pseudomonas syringae pv. tomato str. DC3000, complete genometerminase, large subunit01066
NC_016830:5031819:5034665503466550366772013Pseudomonas fluorescens F113 chromosome, complete genomePhage terminase, large subunit01063
NC_011958:976500:1010709101070910126671959Rhodobacter sphaeroides KD131 chromosome 2, complete genomeBacteriophage tail assembly protein5e-117422
NC_010981:242500:2582532582532600881836Wolbachia pipientis, complete genomePhage terminase large subunit GpA5e-114412
NC_010981:314745:3317733317733336081836Wolbachia pipientis, complete genomePhage terminase large subunit GpA5e-114412
NC_010981:1371265:1384424138442413862591836Wolbachia pipientis, complete genomePhage terminase large subunit GpA5e-114412
NC_012416:1079661:1101135110113511029581824Wolbachia sp. wRi, complete genomeputative phage terminase large subunit1e-110400
NC_012416:573202:5946765946765964991824Wolbachia sp. wRi, complete genomeputative phage terminase large subunit1e-110400
NC_002978:549454:5754605754605772831824Wolbachia endosymbiont of Drosophila melanogaster, complete genomeprophage LambdaW4, terminase large subunit, putative4e-110399
NC_012416:753500:7784427784427802831842Wolbachia sp. wRi, complete genometerminase large subunit, putative1e-109397
NC_009659:3103601:3107482310748231094431962Janthinobacterium sp. Marseille chromosome, complete genomephage terminase, large subunit2e-109397
NC_002978:234082:2505152505152523411827Wolbachia endosymbiont of Drosophila melanogaster, complete genomeprophage LambdaW1, terminase large subunit, putative5e-108392
NC_011420:36272:5246552465544712007Rhodospirillum centenum SW, complete genomephage terminase large subunit (GpA)1e-83311
NC_009253:1265474:1279777127977712816211845Desulfotomaculum reducens MI-1 chromosome, complete genomephage terminase GpA5e-81302
NC_014632:1112733:1134686113468611364971812Ilyobacter polytropus DSM 2926 chromosome, complete genometerminase GpA5e-76286
NC_016585:787498:7874987874987893631866Azospirillum lipoferum 4B plasmid AZO_p1, complete sequencePutative phage terminase GpA4e-74279
NC_015873:1193843:1227903122790312298131911Megasphaera elsdenii DSM 20460, complete genomephage terminase large subunit (GpA)9e-70265
NC_017986:4091051:4108907410890741107931887Pseudomonas putida ND6 chromosome, complete genomephage terminase GpA1e-68261
NC_020126:2381380:2388233238823323900501818Myxococcus stipitatus DSM 14675, complete genomephage terminase, large subunit1e-66254
NC_012724:3100430:3103231310323131053752145Burkholderia glumae BGR1 chromosome 1, complete genomePhage terminase large subunit (GpA)9e-63241
NC_007511:1147696:1168060116806011700571998Burkholderia sp. 383 chromosome 2, complete sequencePhage terminase GpA5e-62239
NC_010508:1206498:1213005121300512149241920Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceterminase GpA2e-55217
NC_016585:417979:4378074378074398912085Azospirillum lipoferum 4B plasmid AZO_p1, complete sequenceputative Terminase large subunit GpA3e-53210
NC_014011:1139818:1150223115022311520881866Aminobacterium colombiense DSM 12261 chromosome, complete genometerminase GpA9e-53208
NC_013361:2169948:2191331219133121932561926Escherichia coli O26:H11 str. 11368 chromosome, complete genometerminase large subunit1e-50202
CP002185:1770815:1773916177391617758411926Escherichia coli W, complete genometerminase GpA9e-51202
NC_002695:2158314:2179626217962621815511926Escherichia coli O157:H7 str. Sakai, complete genomeputative terminase large subunit2e-50200
NC_011750:1565000:1577290157729015792151926Escherichia coli IAI39 chromosome, complete genometerminase large subunit from bacteriophage origin3e-50200
CU928160:1668842:1671943167194316738681926Escherichia coli IAI1 chromosome, complete genomeTerminase large subunit from bacteriophage origin8e-50199
NC_011741:1668842:1671943167194316738681926Escherichia coli IAI1 chromosome, complete genomeTerminase large subunit from bacteriophage origin8e-50199
NC_013941:699286:7185067185067204311926Escherichia coli O55:H7 str. CB9615 chromosome, complete genomebacteriophage tail assembly protein7e-50199
NC_004431:3040953:3044054304405430459791926Escherichia coli CFT073, complete genomePutative DNA packaging protein of prophage5e-50199
NC_020181:2097066:2097066209706620988981833Enterobacter aerogenes EA1509E, complete genomePhage terminase, large subunit2e-48194
NC_013941:1963523:1985696198569619876601965Escherichia coli O55:H7 str. CB9615 chromosome, complete genometerminase large subunit of prophage CP-933O1e-47191
NC_013364:2522888:2556595255659525584931899Escherichia coli O111:H- str. 11128, complete genomeputative terminase large subunit7e-47189
NC_011750:1931384:1953822195382219557501929Escherichia coli IAI39 chromosome, complete genometerminase large subunit (Gp2)1e-46188
NC_011745:2025725:2047507204750720494921986Escherichia coli ED1a chromosome, complete genometerminase large subunit (Gp2)3e-46187
NC_013941:2425233:2460001246000124619651965Escherichia coli O55:H7 str. CB9615 chromosome, complete genometerminase large subunit of prophage CP-933O3e-46187
NC_002655:1909139:1909139190913919111031965Escherichia coli O157:H7 EDL933, complete genomeputative terminase large subunit of prophage CP-933O4e-46186
NC_013941:5317424:5330041533004153320111971Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDNA packaging protein of prophage5e-45183
NC_016613:2160356:2172709217270921747061998Vibrio sp. EJY3 chromosome 1, complete sequencephage terminase GpA4e-44180
NC_011353:1195179:1195179119517911968731695Escherichia coli O157:H7 str. EC4115 chromosome, complete genome8e-44179
NC_009783:1956000:1975306197530619772131908Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein4e-43176
NC_017243:1734179:1749339174933917512521914Brachyspira intermedia PWS/A chromosome, complete genomelarge terminase subunit4e-42173
NC_011748:824367:8421208421208437811662Escherichia coli 55989, complete genomeTerminase large subunit from bacteriophage origin7e-42172
CU928145:824367:8421208421208437811662Escherichia coli 55989 chromosome, complete genomeTerminase large subunit from bacteriophage origin7e-42172
NC_017047:3085000:3114079311407931160011923Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein1e-41172
NC_017033:1052000:1075220107522010771241905Frateuria aurantia DSM 6220 chromosome, complete genomebacteriophage tail assembly protein3e-41170
NC_007907:2534462:2536121253612125379651845Desulfitobacterium hafniense Y51, complete genomehypothetical protein8e-41169
NC_013361:3112023:3114021311402131157661746Escherichia coli O26:H11 str. 11368 chromosome, complete genome1e-40168
NC_009832:2211154:2236048223604822379731926Serratia proteamaculans 568, complete genometerminase GpA4e-40166
CP002797:1960000:1983314198331419850801767Escherichia coli NA114, complete genomeputative terminase large subunit DNA packaging protein6e-39162
NC_009801:2193000:2193020219302021949841965Escherichia coli E24377A, complete genomephage terminase large subunit (GpA)5e-38159
NC_011415:2277559:2279357227935722813211965Escherichia coli SE11 chromosome, complete genomeputative phage DNA packaging protein large subunit5e-38159
NC_007954:3887488:3887488388748838893921905Shewanella denitrificans OS217, complete genomephage terminase GpA2e-37158
NC_009053:553298:5757075757075778242118Actinobacillus pleuropneumoniae L20, complete genomepredicted bacteriophage tail assembly protein2e-35150
NC_017060:59500:8850288502906162115Rahnella aquatilis HX2 plasmid PRA1, complete sequenceterminase GpA1e-34148
NC_010981:314745:346157346157347029873Wolbachia pipientis, complete genomePhage terminase large subunit GpA (fragment)3e-34147
NC_016822:1431200:1454666145466614561261461Shigella sonnei 53G, complete genomehypothetical protein4e-34146
NC_011353:2892265:2910272291027229123952124Escherichia coli O157:H7 str. EC4115 chromosome, complete genomephage terminase large subunit2e-32140
NC_002695:2893951:2916087291608729182102124Escherichia coli O157:H7 str. Sakai, complete genomeputative terminase large subunit2e-32140
NC_011353:2957962:2955842295584229579652124Escherichia coli O157:H7 str. EC4115 chromosome, complete genomephage terminase large subunit3e-32140
NC_011353:1761977:1759857175985717619802124Escherichia coli O157:H7 str. EC4115 chromosome, complete genomephage terminase large subunit3e-32140
NC_011770:860944:8844368844368863911956Pseudomonas aeruginosa LESB58, complete genomePutative large subunit (GpA homolog) of DNA packaging dimer2e-31137
NC_014121:1682638:1701160170116017032622103Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completephage terminase large subunit5e-31136
NC_013008:2910567:2910567291056729125792013Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeDNA packaging protein of prophage CP-933U7e-31135
NC_017047:1906000:1921137192113719232392103Rahnella aquatilis HX2 chromosome, complete genometerminase GpA1e-30135
NC_011740:2769961:2771693277169327738102118Escherichia fergusonii ATCC 35469, complete genomeputative DNA packaging protein of prophage ( terminase large subunit)1e-30135
NC_016612:3314846:3340032334003233421402109Klebsiella oxytoca KCTC 1686 chromosome, complete genomephage terminase large subunit1e-30135
NC_011205:1345511:1373433137343313755742142Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853phage terminase large subunit2e-30134
NC_016831:1734292:1738044173804417400772034Salmonella enterica subsp. enterica serovar Gallinarum/pullorumLarge Subunit of Terminase2e-30134
NC_011742:4962008:4974965497496549770672103Escherichia coli S88 chromosome, complete genomeDNA packaging protein of prophage ( terminase large subunit)6e-30132
NC_008563:5011997:5024955502495550270572103Escherichia coli APEC O1, complete genomeputative DNA packaging protein of prophage CP-933K7e-30132
NC_011751:1859606:1863295186329518653972103Escherichia coli UMN026 chromosome, complete genomeputative DNA packaging protein2e-29131
NC_007907:2534462:2538602253860225397291128Desulfitobacterium hafniense Y51, complete genomehypothetical protein5e-29130
CU928145:1773642:1777741177774117798432103Escherichia coli 55989 chromosome, complete genomeputative DNA packaging protein of putative prophage ( terminase large subunit)4e-29130
NC_011748:1773642:1777741177774117798432103Escherichia coli 55989, complete genomeputative DNA packaging protein of putative prophage ( terminase large subunit)4e-29130
NC_013361:2138716:2142405214240521445042100Escherichia coli O26:H11 str. 11368 chromosome, complete genometerminase large subunit4e-29130
NC_002937:2263763:2281873228187322837981926Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completeterminase, large subunit, putative3e-29130
NC_011740:4520373:4532433453243345345352103Escherichia fergusonii ATCC 35469, complete genomeputative DNA packaging protein of putative prophage ( terminase large subunit)2e-29130
NC_011094:638552:6676816676816698102130Salmonella enterica subsp. enterica serovar Schwarzengrund strphage terminase large subunit3e-28127
NC_011894:2549076:2549076254907625511482073Methylobacterium nodulans ORS 2060, complete genometerminase GpA4e-23110
NC_007712:2028500:2077831207783120791981368Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein1e-1379
NC_010655:1606901:1627047162704716287441698Akkermansia muciniphila ATCC BAA-835, complete genomeBacteriophage tail assembly protein-like protein6e-0653.1