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Query: NC_010322:1336231:1353395 Pseudomonas putida GB-1 chromosome, complete genome

Start: 1353395, End: 1353976, Length: 582

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015733:1943385:196100319610031961584582Pseudomonas putida S16 chromosome, complete genomehypothetical protein6e-93339
NC_004129:2201780:221959622195962220168573Pseudomonas fluorescens Pf-5, complete genomehypothetical protein8e-58223
NC_004578:3849835:385186438518643852433570Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein1e-55215
NC_002947:3404000:342543334254333426044612Pseudomonas putida KT2440, complete genomehypothetical protein6e-43173
NC_017986:5509569:552993855299385530549612Pseudomonas putida ND6 chromosome, complete genomehypothetical protein7e-42169
NC_016830:5031819:503668250366825037284603Pseudomonas fluorescens F113 chromosome, complete genometerminase small subunit1e-36152
NC_005773:2177184:219245721924572193116660Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein7e-26116
NC_008536:2079052:208457320845732085076504Solibacter usitatus Ellin6076, complete genomeputative bacteriophage-related protein8e-0857