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Query: NC_010322:1336231:1343643 Pseudomonas putida GB-1 chromosome, complete genome

Start: 1343643, End: 1345322, Length: 1680

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008060:1182378:119139211913921191715324Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceC-5 cytosine-specific DNA methylase2e-26120
NC_008542:1727000:173607717360771736400324Burkholderia cenocepacia HI2424 chromosome 1, complete sequenceC-5 cytosine-specific DNA methylase2e-26120
NC_010508:1705500:171459317145931714919327Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence5e-27123
NC_011894:3029964:3029964302996430320422079Methylobacterium nodulans ORS 2060, complete genomeC-5 cytosine-specific DNA methylase8e-164577
NC_004129:2201780:2209446220944622111791734Pseudomonas fluorescens Pf-5, complete genomehypothetical protein0714