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Query: NC_010322:1336231:1342457 Pseudomonas putida GB-1 chromosome, complete genome

Start: 1342457, End: 1343071, Length: 615

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017986:4885979:489201548920154892620606Pseudomonas putida ND6 chromosome, complete genomehypothetical protein1e-1273.2
NC_011770:2499432:254229125422912542821531Pseudomonas aeruginosa LESB58, complete genomehypothetical protein2e-1272.4
NC_011770:2690501:2691885269188526937951911Pseudomonas aeruginosa LESB58, complete genomehypothetical protein1e-1169.7
NC_004129:5373886:538193353819335382538606Pseudomonas fluorescens Pf-5, complete genomegp462e-1066.2
NC_017986:4091051:409912740991274099594468Pseudomonas putida ND6 chromosome, complete genomehypothetical protein1e-0859.7
NC_008463:5246954:525382252538225254508687Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein3e-0858.2