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Query: NC_010322:1336231:1342266 Pseudomonas putida GB-1 chromosome, complete genome

Start: 1342266, End: 1342460, Length: 195

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016625:1259778:127152412715241271745222Burkholderia sp. YI23 chromosome 2, complete sequenceBbp491e-1065.1
NC_010645:1496816:149790414979041498266363Bordetella avium 197N, complete genomephage excisionase1e-0962
NC_012660:4558122:457474045747404575021282Pseudomonas fluorescens SBW25 chromosome, complete genomeputative phage excisionase2e-0754.7
NC_015554:1215401:122745912274591227653195Alteromonas sp. SN2 chromosome, complete genomeputative phage excisionase2e-0754.3
NC_010943:1938136:194860619486061948884279Stenotrophomonas maltophilia K279a, complete genomeputative phage excisionase2e-0754.3
NC_002927:3716894:376201037620103762264255Bordetella bronchiseptica RB50, complete genomeputative phage excisionase4e-0650.1