Pre_GI: BLASTP Hits

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Query: NC_010322:1336231:1341043 Pseudomonas putida GB-1 chromosome, complete genome

Start: 1341043, End: 1342296, Length: 1254

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009778:1556222:1561010156101015622931284Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-67255
NC_020260:1615135:1619923161992316212061284Cronobacter sakazakii Sp291, complete genomehypothetical protein1e-66254
NC_010102:1829357:1836497183649718377891293Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-65249
NC_014121:2745097:2759664275966427609561293Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein5e-65248
NC_021066:2226826:2249897224989722511861290Raoultella ornithinolytica B6, complete genomeInt protein3e-62239
CP002516:2305659:2306866230686623081461281Escherichia coli KO11, complete genomeintegrase family protein5e-60232
NC_016902:2305659:2306866230686623081461281Escherichia coli KO11FL chromosome, complete genomeintegrase family protein5e-60232
NC_009801:1756610:1777435177743517787151281Escherichia coli E24377A, complete genomesite-specific recombinase, phage integrase family4e-60232
NC_011415:2153243:2166033216603321673461314Escherichia coli SE11 chromosome, complete genomephage integrase2e-59230
NC_013361:1558423:1558998155899815603081311Escherichia coli O26:H11 str. 11368 chromosome, complete genomeintegrase8e-59228
NC_013364:1183000:1183584118358411848941311Escherichia coli O111:H- str. 11128, complete genomeputative integrase1e-58227
NC_015663:4767443:4791802479180247930821281Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative phage integrase5e-58225
NC_009832:2460027:2464528246452824658141287Serratia proteamaculans 568, complete genomeintegrase family protein4e-55215
NC_016612:3314846:3318797331879733200831287Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein9e-54211
NC_016514:2387312:2410532241053224118181287Enterobacter cloacae EcWSU1 chromosome, complete genomelambdoid prophage Rac integrase2e-53209
NC_009648:1541699:1542683154268315439211239Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative transposase/integrase3e-53209
NC_013850:2182337:2184415218441521856621248Klebsiella variicola At-22 chromosome, complete genomeintegrase family protein3e-52206
CP002516:2580774:2604076260407626053111236Escherichia coli KO11, complete genomeintegrase family protein9e-51201
AC_000091:1407693:1413714141371414149491236Escherichia coli W3110 DNA, complete genomeintegrase9e-51201
CP002185:1493280:1500539150053915017741236Escherichia coli W, complete genomeRac prophage; integrase9e-51201
NC_000913:1404000:1410024141002414112591236Escherichia coli K12, complete genomeRac prophage; integrase9e-51201
NC_010473:1493983:1499420149942015006551236Escherichia coli str. K-12 substr. DH10B, complete genomeRac prophage integrase9e-51201
NC_011415:1472500:1475428147542814766631236Escherichia coli SE11 chromosome, complete genomeputative phage integrase9e-51201
NC_012759:1296000:1302083130208313033181236Escherichia coli BW2952 chromosome, complete genomeRac prophage; integrase9e-51201
NC_016902:2580774:2604076260407626053111236Escherichia coli KO11FL chromosome, complete genomeintegrase family protein9e-51201
NC_012967:1403733:1409170140917014104051236Escherichia coli B str. REL606 chromosome, complete genomeintegrase2e-50200
NC_012947:2366000:2383979238397923852141236Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeintegrase2e-50200
AC_000091:1627049:1653226165322616544221197Escherichia coli W3110 DNA, complete genomepredicted defective integrase1e-48194
NC_000913:1625500:1649536164953616507321197Escherichia coli K12, complete genomeQin prophage; predicted defective integrase2e-48193
NC_008570:2216736:2223672222367222248021131Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome5e-45182
NC_012917:2641000:265608626560862656853768Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeintegrase family protein4e-38159
NC_020063:2449554:2464493246449324655031011Enterobacteriaceae bacterium strain FGI 57, complete genome4e-35149
NC_013971:1927510:193987019398701940574705Erwinia amylovora ATCC 49946 chromosome, complete genomeintegrase (partial)6e-33142
NC_013961:1891000:190234319023431903047705Erwinia amylovora, complete genomeTransposase A from transposon Tn5546e-33142
NC_015733:2720183:2744616274461627458001185Pseudomonas putida S16 chromosome, complete genomephage integrase2e-31136
NC_010943:1938136:1947488194748819486631176Stenotrophomonas maltophilia K279a, complete genomeputative phage integrase protein1e-29130
NC_012559:854507:8724628724628737121251Laribacter hongkongensis HLHK9, complete genomePhage integrase1e-28127
NC_015731:2811579:2817781281778128188661086Nitrosomonas sp. Is79A3 chromosome, complete genomeintegrase family protein1e-26120
NC_017986:4091051:4097376409737640986471272Pseudomonas putida ND6 chromosome, complete genomeintegrase family protein2e-24113
NC_016830:5031819:5047281504728150484891209Pseudomonas fluorescens F113 chromosome, complete genomephage integrase5e-24112
NC_015410:2351464:2364894236489423660601167Pseudomonas mendocina NK-01 chromosome, complete genomephage integrase3e-23109
NC_010645:1496816:1496816149681614979341119Bordetella avium 197N, complete genomephage integrase1e-22108
NC_007963:1552761:1553528155352815546941167Chromohalobacter salexigens DSM 3043, complete genomephage integrase3e-22106
NC_016816:1970189:1974554197455419757321179Pantoea ananatis LMG 5342, complete genomesite-specific recombinase, phage integrase family7e-22105
NC_014922:1360000:1373300137330013744451146Haemophilus influenzae F3047 chromosome, complete genomehypothetical protein2e-21103
NC_013446:1724000:1738058173805817392421185Comamonas testosteroni CNB-2, complete genomephage integrase3e-20100
NC_007946:2931364:2939949293994929411211173Escherichia coli UTI89, complete genomehypothetical protein6e-2099
NC_008563:2946391:2954976295497629561481173Escherichia coli APEC O1, complete genomehypothetical protein6e-2099
NC_011742:2863316:2872287287228728734591173Escherichia coli S88 chromosome, complete genomehypothetical protein6e-2099
NC_013361:3651150:3656440365644036576151176Escherichia coli O26:H11 str. 11368 chromosome, complete genomeintegrase1e-1688.2
NC_007650:722961:7284727284727295421071Burkholderia thailandensis E264 chromosome II, complete sequenceBbp502e-1687
NC_008563:1505405:151939815193981519706309Escherichia coli APEC O1, complete genomeputative integrase3e-1686.7
NC_011294:1465500:146941514694151469723309Salmonella enterica subsp. enterica serovar Enteritidis str4e-1685.9
NC_013941:3300000:3310496331049633116801185Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein7e-1685.5
NC_008577:2402165:2417021241702124182441224Shewanella sp. ANA-3 chromosome 1, complete sequencephage integrase family protein6e-1685.5
NC_013361:2169948:216994821699482170211264Escherichia coli O26:H11 str. 11368 chromosome, complete genomeC-terminus fragment integrase4e-1583.2
NC_010814:3048441:3064888306488830660631176Geobacter lovleyi SZ, complete genomeintegrase family protein6e-1582.4
NC_002927:3716894:3762261376226137634841224Bordetella bronchiseptica RB50, complete genomephage integrase2e-1480.9
NC_011294:1465500:148182814818281482031204Salmonella enterica subsp. enterica serovar Enteritidis str7e-1478.6
NC_016625:1259778:1271811127181112730371227Burkholderia sp. YI23 chromosome 2, complete sequenceBbp507e-1478.6
NC_014500:842493:8599108599108610851176Dickeya dadantii 3937 chromosome, complete genomeIntegrase2e-1377.4
NC_020181:5130513:5161985516198551631511167Enterobacter aerogenes EA1509E, complete genomePhage integrase7e-1375.5
NC_015554:1215401:1226362122636212274861125Alteromonas sp. SN2 chromosome, complete genomephage integrase family protein1e-1274.7
NC_008577:2818546:2835885283588528370631179Shewanella sp. ANA-3 chromosome 1, complete sequencephage integrase family protein1e-1274.7
NC_013716:2764550:2771293277129327724591167Citrobacter rodentium ICC168, complete genomeputative phage integrase2e-1273.9
NC_007650:2429307:244248324424832443055573Burkholderia thailandensis E264 chromosome II, complete sequencebacteriophage integrase family protein3e-1273.6
NC_015761:1630000:163934416393441639553210Salmonella bongori NCTC 12419, complete genome5e-1272.8
NC_011768:1718869:1778114177811417793671254Desulfatibacillum alkenivorans AK-01, complete genomeintegrase family protein1e-1171.6
NC_014910:1765065:177180517718051772131327Alicycliphilus denitrificans BC chromosome, complete genome5e-1066.2
NC_004603:2235142:2246231224623122473431113Vibrio parahaemolyticus RIMD 2210633 chromosome I, completeputative pore-forming cytotoxin integrase1e-0964.7
NC_020126:4084114:4090839409083940920531215Myxococcus stipitatus DSM 14675, complete genomephage integrase family site specific recombinase1e-0964.7
NC_012691:1743038:1765544176554417667251182Tolumonas auensis DSM 9187, complete genomeintegrase family protein2e-0963.9
NC_016048:3667890:3691910369191036930701161Oscillibacter valericigenes Sjm18-20, complete genomeputative site-specific recombinase6e-0962.4
NC_017368:468934:482826482826483788963Helicobacter pylori F16, complete genomeputative phage integrase protein7e-0962
NC_017986:5421000:542508054250805425499420Pseudomonas putida ND6 chromosome, complete genomeintegrase2e-0860.8
NC_009009:219087:2297012297012308401140Streptococcus sanguinis SK36, complete genomeIntegrase/recombinase, phage associated, putative3e-0860.1
NC_006138:2288261:2292660229266022938831224Desulfotalea psychrophila LSv54, complete genomesimilar to pore-forming cytotoxin integrase3e-0860.1
NC_009512:3118907:313070331307033131053351Pseudomonas putida F1, complete genome3e-0860.1
NC_008699:2418722:2443413244341324446001188Nocardioides sp. JS614, complete genomephage integrase family protein4e-0859.7
NC_014650:603500:6101966101966113951200Geobacillus sp. Y4.1MC1 chromosome, complete genomeintegrase9e-0858.5
NC_006448:1709523:1731747173174717328861140Streptococcus thermophilus LMG 18311, complete genomeintegrase/recombinase, phage associated1e-0758.2
NC_011294:1006630:101338110133811013578198Salmonella enterica subsp. enterica serovar Enteritidis str3e-0757
NC_011146:3537546:355012435501243550897774Geobacter bemidjiensis Bem, complete genomeintegrase family protein7e-0755.5
NC_008148:2231045:2231045223104522321811137Rubrobacter xylanophilus DSM 9941, complete genomephage integrase8e-0755.5
NC_013446:2961647:299325129932512993778528Comamonas testosteroni CNB-2, complete genomephage integrase8e-0755.5
NC_013205:1123280:1130843113084311320181176Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,integrase family protein1e-0655.1
NC_012108:2159230:2163721216372121648811161Desulfobacterium autotrophicum HRM2, complete genomepredicted bacteriophage P4 integrase1e-0654.7
NC_007644:1847000:1850618185061818517901173Moorella thermoacetica ATCC 39073, complete genomePhage integrase1e-0654.7
NC_015572:427732:453825453825454112288Methylomonas methanica MC09 chromosome, complete genome2e-0654.3
NC_018750:5293829:5316938531693853180921155Streptomyces venezuelae ATCC 10712, complete genomephage integrase family protein5e-0652.8
NC_016887:2269177:229043022904302291269840Nocardia cyriacigeorgica GUH-2, complete genomephage integrase5e-0652.8
NC_016947:666627:6723846723846734751092Mycobacterium intracellulare MOTT-02 chromosome, complete genomeprophage integrase5e-0652.8