Pre_GI: BLASTN Hits

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Query: NC_010102:3919999 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 3919999, End: 3942684, Length: 22686

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_006511:37595503759550378272123172Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC042710BLASTN svgBLASTP svg
NC_003198:38551573855157387914223986Salmonella enterica subsp. enterica serovar Typhi str. CT18,040300BLASTN svgBLASTP svg
NC_004631:38419753841975386463222658Salmonella enterica subsp. enterica serovar Typhi Ty2, complete037870BLASTN svgBLASTP svg
NC_011083:39856183985618400872023103Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,036230BLASTN svgBLASTP svg
NC_003197:39719053971905399451122607Salmonella typhimurium LT2, complete genome036230BLASTN svgBLASTP svg
NC_011149:38959213895921391809922179Salmonella enterica subsp. enterica serovar Agona str. SL483,035970BLASTN svgBLASTP svg
NC_006905:39139883913988393189817911Salmonella enterica subsp. enterica serovar Choleraesuis str022070BLASTN svgBLASTP svg
NC_011080:39419093941909396414422236Salmonella enterica subsp. enterica serovar Newport str. SL254,021910BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome02837BLASTN svgBLASTP svg
NC_009792:46931524693152471999926848Citrobacter koseri ATCC BAA-895, complete genome02256BLASTN svgBLASTP svg
NC_021066:4177217*4177217419564918433Raoultella ornithinolytica B6, complete genome02173BLASTN svgBLASTP svg
NC_002695:45841774584177463575951583Escherichia coli O157:H7 str. Sakai, complete genome01798BLASTN svgBLASTP svg
NC_004431:27986827986832229542428Escherichia coli CFT073, complete genome01259BLASTN svgBLASTP svg
NC_011750:43900004390000444275952760Escherichia coli IAI39 chromosome, complete genome01225BLASTN svgBLASTP svg
NC_008253:3122148*3122148315923237085Escherichia coli 536, complete genome01195BLASTN svgBLASTP svg
NC_002655:46531604653160470328250123Escherichia coli O157:H7 EDL933, complete genome01158BLASTN svgBLASTP svg
CP002797:4603787*4603787464340739621Escherichia coli NA114, complete genome01152BLASTN svgBLASTP svg
NC_013716:4306695*4306695439827491580Citrobacter rodentium ICC168, complete genome0797BLASTN svgBLASTP svg
CP002185:4035502*4035502406409928598Escherichia coli W, complete genome3e-126460BLASTN svgBLASTP svg
NC_020064:79422*7942212524145820Serratia marcescens FGI94, complete genome1e-42182BLASTN svgBLASTP svg
NC_013282:20260832026083208019854116Cronobacter turicensis, complete genome2e-28135BLASTN svgBLASTP svg
NC_012912:41674294167429418510117673Dickeya zeae Ech1591, complete genome5e-26127BLASTN svgBLASTP svg
NC_012779:36527373652737367609923363Edwardsiella ictaluri 93-146, complete genome5e-26127BLASTN svgBLASTP svg
NC_009778:19562251956225198255126327Enterobacter sakazakii ATCC BAA-894, complete genome5e-20107BLASTN svgBLASTP svg
NC_020260:19933441993344201786024517Cronobacter sakazakii Sp291, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_014562:3985500*3985500400317017671Pantoea vagans C9-1 chromosome, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_009792:36653693665369370602240654Citrobacter koseri ATCC BAA-895, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_015224:35875003587500361767930180Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-1385.7BLASTN svgBLASTP svg
NC_014837:1144500*1144500117382529326Pantoea sp. At-9b chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_003197:77623877623880454628309Salmonella typhimurium LT2, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_011080:78085078085080915728308Salmonella enterica subsp. enterica serovar Newport str. SL254,4e-0867.9BLASTN svgBLASTP svg
NC_011083:82465982465985295528297Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,4e-0867.9BLASTN svgBLASTP svg
NC_015663:18690001869000191219543196Enterobacter aerogenes KCTC 2190 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_021064:1789980*1789980181232622347Propionibacterium avidum 44067, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011080:2789744*2789744281281123068Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-0765.9BLASTN svgBLASTP svg
NC_011149:2701916*2701916272409922184Salmonella enterica subsp. enterica serovar Agona str. SL483,7e-0763.9BLASTN svgBLASTP svg
NC_020063:2011019*2011019203659925581Enterobacteriaceae bacterium strain FGI 57, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_003198:3586000*3586000360812122122Salmonella enterica subsp. enterica serovar Typhi str. CT18,3e-0661.9BLASTN svgBLASTP svg
NC_004631:283289*28328930183618548Salmonella enterica subsp. enterica serovar Typhi Ty2, complete3e-0661.9BLASTN svgBLASTP svg
NC_006511:4119332*4119332413716217831Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC3e-0661.9BLASTN svgBLASTP svg
NC_006905:2805877*2805877282870222826Salmonella enterica subsp. enterica serovar Choleraesuis str3e-0661.9BLASTN svgBLASTP svg
NC_013716:1918664*1918664194320924546Citrobacter rodentium ICC168, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013716:3512950*3512950355955346604Citrobacter rodentium ICC168, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013716:5201097*5201097527659975503Citrobacter rodentium ICC168, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_020063:4127161*4127161415360026440Enterobacteriaceae bacterium strain FGI 57, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_003198:2703013*2703013272616623154Salmonella enterica subsp. enterica serovar Typhi str. CT18,3e-0661.9BLASTN svgBLASTP svg