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Query: NC_010102:25893 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 25893, End: 48155, Length: 22263

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011080:25751257514830822558Salmonella enterica subsp. enterica serovar Newport str. SL254,013310BLASTN svgBLASTP svg
NC_003197:25803258034831722515Salmonella typhimurium LT2, complete genome013300BLASTN svgBLASTP svg
NC_011149:25760257604831422555Salmonella enterica subsp. enterica serovar Agona str. SL483,013150BLASTN svgBLASTP svg
NC_006511:25796257964828322488Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC012990BLASTN svgBLASTP svg
NC_004631:25807258074831322507Salmonella enterica subsp. enterica serovar Typhi Ty2, complete012960BLASTN svgBLASTP svg
NC_003198:25807258074831322507Salmonella enterica subsp. enterica serovar Typhi str. CT18,012960BLASTN svgBLASTP svg
NC_010067:28814482881448290411422667Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete08358BLASTN svgBLASTP svg
AP010958:12660*126603398921330Escherichia coli O103:H2 str. 12009 DNA, complete genome01134BLASTN svgBLASTP svg
CP002185:11921*119213722925309Escherichia coli W, complete genome01134BLASTN svgBLASTP svg
CP002516:4081484*4081484410409522612Escherichia coli KO11, complete genome01134BLASTN svgBLASTP svg
CU928145:11394*113943596224569Escherichia coli 55989 chromosome, complete genome01134BLASTN svgBLASTP svg
CU928160:11381*113813595024570Escherichia coli IAI1 chromosome, complete genome01134BLASTN svgBLASTP svg
NC_009800:12162*121623729725136Escherichia coli HS, complete genome01134BLASTN svgBLASTP svg
NC_009801:11921*119213399422074Escherichia coli E24377A, complete genome01134BLASTN svgBLASTP svg
NC_011748:11394*113943596224569Escherichia coli 55989, complete genome01134BLASTN svgBLASTP svg
NC_010468:3970995*3970995399406323069Escherichia coli ATCC 8739, complete genome01132BLASTN svgBLASTP svg
NC_011750:12047*120474221230166Escherichia coli IAI39 chromosome, complete genome01118BLASTN svgBLASTP svg
NC_007384:16500*165004120424705Shigella sonnei Ss046, complete genome01102BLASTN svgBLASTP svg
NC_011751:12000*120003835526356Escherichia coli UMN026 chromosome, complete genome01086BLASTN svgBLASTP svg
NC_002695:12000*120003517323174Escherichia coli O157:H7 str. Sakai, complete genome0773BLASTN svgBLASTP svg
NC_002655:12000*120003357021571Escherichia coli O157:H7 EDL933, complete genome0773BLASTN svgBLASTP svg
NC_013850:4612812*4612812463649923688Klebsiella variicola At-22 chromosome, complete genome0706BLASTN svgBLASTP svg
NC_008149:402599*40259942390621308Yersinia pestis Nepal516, complete genome3e-80307BLASTN svgBLASTP svg
NC_006155:713174*71317473201318840Yersinia pseudotuberculosis IP 32953, complete genome3e-80307BLASTN svgBLASTP svg
NC_008150:4561633*4561633458159919967Yersinia pestis Antiqua, complete genome1e-42182BLASTN svgBLASTP svg
NC_003143:483395*48339550335019956Yersinia pestis CO92, complete genome2e-35159BLASTN svgBLASTP svg
NC_010159:80966380966383240722745Yersinia pestis Angola, complete genome6e-35157BLASTN svgBLASTP svg
NC_008322:3585601*3585601360929823698Shewanella sp. MR-7, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_009092:1263964*1263964129309929136Shewanella loihica PV-4, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_004347:3670145*3670145369364023496Shewanella oneidensis MR-1, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_015424:3890293*3890293391528924997Aeromonas veronii B565 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013526:43981343981347960839796Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genome3e-0661.9BLASTN svgBLASTP svg