Query: NC_010102:2178594 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,
Start: 2178594, End: 2203462, Length: 24869
Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria
General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_003197:920000 | 920000 | 944394 | 24395 | Salmonella typhimurium LT2, complete genome | 0 | 25290 | BLASTN svg | BLASTP svg |
NC_011083:967260 | 967260 | 989099 | 21840 | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476, | 0 | 25090 | BLASTN svg | BLASTP svg |
NC_011080:924326 | 924326 | 946963 | 22638 | Salmonella enterica subsp. enterica serovar Newport str. SL254, | 0 | 24940 | BLASTN svg | BLASTP svg |
NC_006905:946418 | 946418 | 972141 | 25724 | Salmonella enterica subsp. enterica serovar Choleraesuis str | 0 | 14370 | BLASTN svg | BLASTP svg |
NC_010067:2488141 | 2488141 | 2519373 | 31233 | Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete | 0 | 3830 | BLASTN svg | BLASTP svg |
AP010958:922937 | 922937 | 950986 | 28050 | Escherichia coli O103:H2 str. 12009 DNA, complete genome | 0 | 646 | BLASTN svg | BLASTP svg |
NC_012917:1923059* | 1923059 | 1947695 | 24637 | Pectobacterium carotovorum subsp. carotovorum PC1, complete genome | 6e-131 | 476 | BLASTN svg | BLASTP svg |
NC_013508:2356865* | 2356865 | 2388599 | 31735 | Edwardsiella tarda EIB202, complete genome | 2e-96 | 361 | BLASTN svg | BLASTP svg |
NC_012917:1740542 | 1740542 | 1766929 | 26388 | Pectobacterium carotovorum subsp. carotovorum PC1, complete genome | 1e-45 | 192 | BLASTN svg | BLASTP svg |
NC_009832:1664238 | 1664238 | 1696232 | 31995 | Serratia proteamaculans 568, complete genome | 5e-45 | 190 | BLASTN svg | BLASTP svg |
NC_015424:3112637* | 3112637 | 3180033 | 67397 | Aeromonas veronii B565 chromosome, complete genome | 7e-44 | 186 | BLASTN svg | BLASTP svg |
NC_020211:1655826* | 1655826 | 1678705 | 22880 | Serratia marcescens WW4, complete genome | 1e-33 | 153 | BLASTN svg | BLASTP svg |
NC_020064:1501441 | 1501441 | 1519843 | 18403 | Serratia marcescens FGI94, complete genome | 2e-29 | 139 | BLASTN svg | BLASTP svg |
NC_012880:2871480* | 2871480 | 2897001 | 25522 | Dickeya dadantii Ech703, complete genome | 3e-18 | 101 | BLASTN svg | BLASTP svg |
NC_015061:2867027* | 2867027 | 2887175 | 20149 | Rahnella sp. Y9602 chromosome, complete genome | 5e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_014500:2019113 | 2019113 | 2047795 | 28683 | Dickeya dadantii 3937 chromosome, complete genome | 5e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_020064:79422* | 79422 | 125241 | 45820 | Serratia marcescens FGI94, complete genome | 8e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_020064:1611820* | 1611820 | 1635185 | 23366 | Serratia marcescens FGI94, complete genome | 8e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_015572:1974000* | 1974000 | 1996165 | 22166 | Methylomonas methanica MC09 chromosome, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_014958:843456* | 843456 | 869437 | 25982 | Deinococcus maricopensis DSM 21211 chromosome, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_004347:4211241* | 4211241 | 4236439 | 25199 | Shewanella oneidensis MR-1, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_014838:175939 | 175939 | 205090 | 29152 | Pantoea sp. At-9b plasmid pPAT9B01, complete sequence | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_008702:1094663* | 1094663 | 1118488 | 23826 | Azoarcus sp. BH72, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_014500:1862000* | 1862000 | 1917268 | 55269 | Dickeya dadantii 3937 chromosome, complete genome | 8e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_010634:1809500 | 1809500 | 1829099 | 19600 | Yersinia pseudotuberculosis PB1/+, complete genome | 8e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_006155:1807902 | 1807902 | 1828575 | 20674 | Yersinia pseudotuberculosis IP 32953, complete genome | 8e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_015061:2770856 | 2770856 | 2795599 | 24744 | Rahnella sp. Y9602 chromosome, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_014761:743113 | 743113 | 764885 | 21773 | Oceanithermus profundus DSM 14977 chromosome, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_013960:138488 | 138488 | 167632 | 29145 | Nitrosococcus halophilus Nc4 chromosome, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_007948:4620661 | 4620661 | 4643252 | 22592 | Polaromonas sp. JS666, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_012779:2424967* | 2424967 | 2449599 | 24633 | Edwardsiella ictaluri 93-146, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_014121:1653385 | 1653385 | 1672709 | 19325 | Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_009052:4437649* | 4437649 | 4461344 | 23696 | Shewanella baltica OS155, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_012880:1711062* | 1711062 | 1730951 | 19890 | Dickeya dadantii Ech703, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_008043:86470* | 86470 | 108480 | 22011 | Silicibacter sp. TM1040 mega plasmid, complete sequence | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |