Pre_GI: BLASTN Hits

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Query: NC_010102:1703172 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 1703172, End: 1725122, Length: 21951

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_006511:1579776*1579776160172721952Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC034940BLASTN svgBLASTP svg
NC_003198:1693623*1693623171542721805Salmonella enterica subsp. enterica serovar Typhi str. CT18,029890BLASTN svgBLASTP svg
NC_003197:1401603*1401603142524123639Salmonella typhimurium LT2, complete genome026580BLASTN svgBLASTP svg
NC_011083:1408202*1408202142698618785Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,023690BLASTN svgBLASTP svg
NC_004631:1271500*1271500129345821959Salmonella enterica subsp. enterica serovar Typhi Ty2, complete023610BLASTN svgBLASTP svg
NC_010658:1772994*1772994179509922106Shigella boydii CDC 3083-94, complete genome04375BLASTN svgBLASTP svg
NC_020063:2011019*2011019203659925581Enterobacteriaceae bacterium strain FGI 57, complete genome03985BLASTN svgBLASTP svg
NC_013850:2103469*2103469214696843500Klebsiella variicola At-22 chromosome, complete genome03772BLASTN svgBLASTP svg
NC_007613:1353500*1353500137891925420Shigella boydii Sb227, complete genome02753BLASTN svgBLASTP svg
NC_014500:2589089*2589089260812419036Dickeya dadantii 3937 chromosome, complete genome01927BLASTN svgBLASTP svg
NC_012912:2216749*2216749224082124073Dickeya zeae Ech1591, complete genome01744BLASTN svgBLASTP svg
NC_012880:2425330*2425330245003424705Dickeya dadantii Ech703, complete genome01001BLASTN svgBLASTP svg
NC_014228:1712339*1712339175523642898Xenorhabdus nematophila ATCC 19061, complete genome4e-122446BLASTN svgBLASTP svg
NC_005126:31217223121722318069058969Photorhabdus luminescens subsp. laumondii TTO1, complete genome4e-110406BLASTN svgBLASTP svg
NC_014839:253961*25396131222658266Pantoea sp. At-9b plasmid pPAT9B02, complete sequence4e-73283BLASTN svgBLASTP svg
NC_011083:33891033891036299924090Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-71278BLASTN svgBLASTP svg
NC_010102:27623042762304278909926796Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,1e-66262BLASTN svgBLASTP svg
NC_006905:4638707*4638707467273934033Salmonella enterica subsp. enterica serovar Choleraesuis str5e-66260BLASTN svgBLASTP svg
NC_006511:42254554225455425318227728Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC3e-64254BLASTN svgBLASTP svg
NC_011149:46774124677412471244835037Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-63252BLASTN svgBLASTP svg
NC_011080:33312133312135949426374Salmonella enterica subsp. enterica serovar Newport str. SL254,5e-63250BLASTN svgBLASTP svg
NC_011149:30955630955633763728082Salmonella enterica subsp. enterica serovar Agona str. SL483,5e-63250BLASTN svgBLASTP svg
NC_011080:47032664703266472876525500Salmonella enterica subsp. enterica serovar Newport str. SL254,3e-61244BLASTN svgBLASTP svg
NC_004631:26159082615908263824422337Salmonella enterica subsp. enterica serovar Typhi Ty2, complete1e-60242BLASTN svgBLASTP svg
NC_010102:4745949*4745949476837922431Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,8e-59236BLASTN svgBLASTP svg
NC_012779:1820244*1820244184249822255Edwardsiella ictaluri 93-146, complete genome8e-56226BLASTN svgBLASTP svg
NC_003198:1621347*1621347164626724921Salmonella enterica subsp. enterica serovar Typhi str. CT18,3e-55224BLASTN svgBLASTP svg
NC_004631:13258171325817135139825582Salmonella enterica subsp. enterica serovar Typhi Ty2, complete3e-55224BLASTN svgBLASTP svg
NC_006905:15090931509093153636427272Salmonella enterica subsp. enterica serovar Choleraesuis str3e-55224BLASTN svgBLASTP svg
NC_002506:298868*29886831909920232Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete3e-52214BLASTN svgBLASTP svg
NC_020063:2565605*2565605259927233668Enterobacteriaceae bacterium strain FGI 57, complete genome7e-50206BLASTN svgBLASTP svg
NC_012912:84433984433986800523667Dickeya zeae Ech1591, complete genome3e-46194BLASTN svgBLASTP svg
NC_012912:24270924270927148728779Dickeya zeae Ech1591, complete genome2e-38168BLASTN svgBLASTP svg
NC_002516:3079850*3079850310675226903Pseudomonas aeruginosa PAO1, complete genome2e-37165BLASTN svgBLASTP svg
NC_008463:2467219*2467219250339236174Pseudomonas aeruginosa UCBPP-PA14, complete genome1e-35159BLASTN svgBLASTP svg
NC_012779:95755895755898306025503Edwardsiella ictaluri 93-146, complete genome1e-32149BLASTN svgBLASTP svg
NC_009434:2577717*2577717259643418718Pseudomonas stutzeri A1501, complete genome3e-30141BLASTN svgBLASTP svg
NC_003197:1170746*1170746119097320228Salmonella typhimurium LT2, complete genome1e-29139BLASTN svgBLASTP svg
NC_003197:33208633208635504122956Salmonella typhimurium LT2, complete genome1e-29139BLASTN svgBLASTP svg
NC_003198:3881221*3881221390454423324Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-29139BLASTN svgBLASTP svg
NC_006511:25405002540500256809927600Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC1e-29139BLASTN svgBLASTP svg
NC_011080:11669511166951119330926359Salmonella enterica subsp. enterica serovar Newport str. SL254,1e-29139BLASTN svgBLASTP svg
NC_011083:1173802*1173802119655222751Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,1e-29139BLASTN svgBLASTP svg
NC_005126:274000*27400029651122512Photorhabdus luminescens subsp. laumondii TTO1, complete genome5e-29137BLASTN svgBLASTP svg
NC_015740:2407500*2407500244682739328Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete1e-26129BLASTN svgBLASTP svg
NC_021150:2026496*2026496204664620151Azotobacter vinelandii CA6, complete genome2e-25125BLASTN svgBLASTP svg
NC_015224:44261674426167445165025484Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-25125BLASTN svgBLASTP svg
NC_012560:2026483*2026483204663320151Azotobacter vinelandii DJ, complete genome2e-25125BLASTN svgBLASTP svg
NC_010102:16165301616530165555739028Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,8e-25123BLASTN svgBLASTP svg
NC_011149:1035990*1035990106096324974Salmonella enterica subsp. enterica serovar Agona str. SL483,8e-25123BLASTN svgBLASTP svg
NC_011149:17106011710601173914728547Salmonella enterica subsp. enterica serovar Agona str. SL483,3e-24121BLASTN svgBLASTP svg
NC_005126:5188976*5188976521454825573Photorhabdus luminescens subsp. laumondii TTO1, complete genome3e-24121BLASTN svgBLASTP svg
NC_012779:26198712619871264372223852Edwardsiella ictaluri 93-146, complete genome5e-23117BLASTN svgBLASTP svg
NC_011770:2499432*2499432255697257541Pseudomonas aeruginosa LESB58, complete genome5e-23117BLASTN svgBLASTP svg
NC_003197:1471349*1471349150894537597Salmonella typhimurium LT2, complete genome2e-22115BLASTN svgBLASTP svg
NC_003198:1078113*1078113110191423802Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-22115BLASTN svgBLASTP svg
NC_004631:1881214*1881214190534324130Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-22115BLASTN svgBLASTP svg
NC_006511:1808815*1808815183245923645Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC2e-22115BLASTN svgBLASTP svg
NC_011083:14768941476894150250725614Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-22115BLASTN svgBLASTP svg
NC_012779:33168773316877333727020394Edwardsiella ictaluri 93-146, complete genome2e-22115BLASTN svgBLASTP svg
NC_013508:31889783188978324937660399Edwardsiella tarda EIB202, complete genome2e-22115BLASTN svgBLASTP svg
NC_012779:25861752586175261323427060Edwardsiella ictaluri 93-146, complete genome8e-22113BLASTN svgBLASTP svg
NC_015410:3209954*3209954323120121248Pseudomonas mendocina NK-01 chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_007947:2140000*2140000218514745148Methylobacillus flagellatus KT, complete genome5e-20107BLASTN svgBLASTP svg
NC_010102:2020762*2020762204160320842Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,2e-19105BLASTN svgBLASTP svg
NC_012779:1449500*1449500150683157332Edwardsiella ictaluri 93-146, complete genome2e-19105BLASTN svgBLASTP svg
NC_012880:15852551585255161262427370Dickeya dadantii Ech703, complete genome2e-19105BLASTN svgBLASTP svg
NC_012880:2399205*2399205242050221298Dickeya dadantii Ech703, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_011080:14707941470794150838537592Salmonella enterica subsp. enterica serovar Newport str. SL254,1e-1799.6BLASTN svgBLASTP svg
NC_009512:3618055*3618055363859920545Pseudomonas putida F1, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_006511:1506915*1506915154594239028Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC1e-1799.6BLASTN svgBLASTP svg
NC_003112:744476*74447676938624911Neisseria meningitidis MC58, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_002947:2809591*2809591283264923059Pseudomonas putida KT2440, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_012779:20645822064582209112726546Edwardsiella ictaluri 93-146, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_013166:1841446*1841446185969318248Kangiella koreensis DSM 16069, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012779:12865001286500132459938100Edwardsiella ictaluri 93-146, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_003143:1059580*1059580109467535096Yersinia pestis CO92, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_004088:3689000*3689000372277733778Yersinia pestis KIM, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_005810:39172543917254395265235399Yersinia pestis biovar Microtus str. 91001, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_006155:3805640*3805640384073735098Yersinia pseudotuberculosis IP 32953, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_008149:3556999*3556999359064933651Yersinia pestis Nepal516, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_008150:31790331790335159933697Yersinia pestis Antiqua, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_010159:17246917246919591323445Yersinia pestis Angola, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_010634:3720214*3720214375380933596Yersinia pseudotuberculosis PB1/+, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_012912:40718594071859411755145693Dickeya zeae Ech1591, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_012779:3176820*3176820323178054961Edwardsiella ictaluri 93-146, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_013592:14245601424560145021625657Dickeya dadantii Ech586, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_016002:1326500*1326500135490028401Pseudogulbenkiania sp. NH8B, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_018691:3525430*3525430358162756198Alcanivorax dieselolei B5 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_012660:4558122*4558122459234134220Pseudomonas fluorescens SBW25 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_007086:1988000*1988000201548327484Xanthomonas campestris pv. campestris str. 8004, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_003902:2903493*2903493292609922607Xanthomonas campestris pv. campestris str. ATCC 33913, complete3e-1281.8BLASTN svgBLASTP svg
NC_013959:1723037*1723037174709924063Sideroxydans lithotrophicus ES-1 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008781:21088932108893212953620644Polaromonas naphthalenivorans CJ2, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_018868:569423*56942361904449622Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_004129:2328491*2328491236123032740Pseudomonas fluorescens Pf-5, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_006511:3364448*3364448338809923652Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC1e-0869.9BLASTN svgBLASTP svg
NC_006905:13424741342474137811135638Salmonella enterica subsp. enterica serovar Choleraesuis str1e-0869.9BLASTN svgBLASTP svg
NC_010102:17797071779707181158331877Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,1e-0869.9BLASTN svgBLASTP svg
NC_011080:1321268*1321268133914217875Salmonella enterica subsp. enterica serovar Newport str. SL254,1e-0869.9BLASTN svgBLASTP svg
NC_011083:1323827*1323827134240718581Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,1e-0869.9BLASTN svgBLASTP svg
NC_011149:1870931*1870931190072529795Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-0869.9BLASTN svgBLASTP svg
NC_011149:3863913*3863913388509921187Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-0869.9BLASTN svgBLASTP svg
NC_015500:987641*987641101630028660Treponema brennaborense DSM 12168 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008702:1153344*1153344117844425101Azoarcus sp. BH72, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004757:1021355*1021355105233830984Nitrosomonas europaea ATCC 19718, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_007492:2203220*2203220222417320954Pseudomonas fluorescens PfO-1, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010803:11325001132500115901826519Chlorobium limicola DSM 245, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_012968:1731976*1731976175455122576Methylotenera mobilis JLW8, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012779:21275422127542216530837767Edwardsiella ictaluri 93-146, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009663:2500186*2500186252039120206Sulfurovum sp. NBC37-1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008781:2981868*2981868300465822791Polaromonas naphthalenivorans CJ2, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_003197:1320861*1320861134738426524Salmonella typhimurium LT2, complete genome3e-0661.9BLASTN svgBLASTP svg