Pre_GI: BLASTP Hits

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Query: NC_010102:4477836:4488653 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 4488653, End: 4488763, Length: 111

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011083:4547825:455825145582514558466216Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,5e-1476.6
NC_011149:4474012:448447144844714484686216Salmonella enterica subsp. enterica serovar Agona str. SL483,5e-1476.3
NC_016831:1865681:187452318745231874888366Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein5e-1269.7
NC_011205:1227373:123693812369381237270333Salmonella enterica subsp. enterica serovar Dublin str. CT_020218535e-1269.7
NC_012214:1650523:166907016690701669924855Erwinia pyrifoliae Ep1/96, complete genomeTransposase, orf B6e-1269.3
NC_012214:2221702:226107322610732261927855Erwinia pyrifoliae Ep1/96, complete genomeTransposase IS3/IS911, probale orf B6e-1269.3
NC_012214:1650523:165905116590511659905855Erwinia pyrifoliae Ep1/96, complete genomeTransposase IS3/IS911, orf B6e-1269.3
NC_012214:1355500:136944813694481370302855Erwinia pyrifoliae Ep1/96, complete genomeTransposase, probable orf A6e-1269.3
NC_020064:3998715:406440140644014065255855Serratia marcescens FGI94, complete genometransposase8e-1268.9
NC_006905:401154:413672413672414535864Salmonella enterica subsp. enterica serovar Choleraesuis strputative IS3 transposase9e-1268.9
NC_011149:1110642:112259011225901123456867Salmonella enterica subsp. enterica serovar Agona str. SL483,ISEc16, orfB1e-1168.2
NC_011083:403022:416536416536417006471Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-1167.8
NC_003197:2894344:291097729109772911843867Salmonella typhimurium LT2, complete genomeputative transposase2e-1167.8
NC_011083:2847318:288548328854832886349867Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,transposase InsF for insertion sequence IS3A/B/C/D/E/fA2e-1167.8
NC_016856:2896630:293121229312122932078867Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative transposase2e-1167.8
NC_016863:2844883:287946528794652880331867Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative transposase2e-1167.8
NC_016860:2917910:293454329345432935409867Salmonella enterica subsp. enterica serovar Typhimurium strIS3 transposase InsF2e-1167.8
NC_006511:4465495:447119944711994472053855Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC7e-1165.9
NC_008253:296500:303560303560304414855Escherichia coli 536, complete genometransposase8e-1165.9
NC_004337:3590323:381040938104093810900492Shigella flexneri 2a str. 301, complete genomeIS3 ORF28e-1165.9
NC_008258:2905413:291114829111482912014867Shigella flexneri 5 str. 8401, complete genomeIS3 ORF29e-1165.5
NC_017328:3088907:314054631405463141412867Shigella flexneri 2002017 chromosome, complete genomeIS3 orfB1e-1065.5
NC_004337:3049118:310217931021793103045867Shigella flexneri 2a str. 301, complete genomeIS3 ORF21e-1065.5
NC_004741:3041294:309166830916683092534867Shigella flexneri 2a str. 2457T, complete genomeIS3 orfB1e-1065.5
NC_013361:3287671:330765133076513308253603Escherichia coli O26:H11 str. 11368 chromosome, complete genome1e-1065.5
NC_009801:3013838:302677030267703027636867Escherichia coli E24377A, complete genomeIS3, transposase orfB9e-1165.5
NC_008258:1076922:108889210888921089758867Shigella flexneri 5 str. 8401, complete genomeIS3 ORF29e-1165.5
CU928160:2091249:211327021132702114136867Escherichia coli IAI1 chromosome, complete genomeIS3 element protein InsF9e-1165.5
NC_010468:4059436:406845740684574069323867Escherichia coli ATCC 8739, complete genomeIntegrase catalytic region9e-1165.5
NC_004337:1065609:106951210695121070378867Shigella flexneri 2a str. 301, complete genomeIS3 ORF29e-1165.5
NC_011741:2091249:211327021132702114136867Escherichia coli IAI1 chromosome, complete genomeIS3 element protein InsF9e-1165.5
NC_012947:2189533:219422521942252195091867Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeIntegrase catalytic region9e-1165.5
NC_011740:2859933:286084028608402861706867Escherichia fergusonii ATCC 35469, complete genomeIS3 element protein InsF9e-1165.5
NC_004431:1166568:117443811744381174653216Escherichia coli CFT073, complete genome1e-1065.1
AC_000091:558920:566361566361567227867Escherichia coli W3110 DNA, complete genomeIS3 element protein InsF2e-1064.3
AC_000091:1083798:109469710946971095563867Escherichia coli W3110 DNA, complete genomeIS3 element protein InsF2e-1064.3
NC_010473:279948:290361290361291227867Escherichia coli str. K-12 substr. DH10B, complete genomeIS3 element protein InsF2e-1064.3
CP002516:44744:521675216753033867Escherichia coli KO11, complete genomeIntegrase catalytic region2e-1064.3
NC_000913:1087062:109349810934981094364867Escherichia coli K12, complete genomeIS3 element protein InsF2e-1064.3
CU928159:30700:341503415035016867Escherichia coli str. 55989 plasmid 55989p, complete genometransposase ORF B, IS32e-1064.3
CP002516:1165726:117256111725611173427867Escherichia coli KO11, complete genomeIntegrase catalytic region2e-1064.3
NC_010468:2809125:281459028145902815456867Escherichia coli ATCC 8739, complete genomeIntegrase catalytic region2e-1064.3
NC_017328:1075535:109566610956661096532867Shigella flexneri 2002017 chromosome, complete genomeIS3, transposase orfB2e-1064.3
NC_011415:3006794:302033130203313021197867Escherichia coli SE11 chromosome, complete genometransposase2e-1064.3
AC_000091:303719:314811314811315677867Escherichia coli W3110 DNA, complete genomeIS3 element protein InsF2e-1064.3
NC_010473:498252:505693505693506559867Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; IS3 element protein InsF2e-1064.3
NC_000913:303719:314811314811315677867Escherichia coli K12, complete genomeIS3 element protein InsF2e-1064.3
NC_013364:3701895:371893437189343719800867Escherichia coli O111:H- str. 11128, complete genomeputative IS3 transposase InsF2e-1064.3
NC_016902:44744:521675216753033867Escherichia coli KO11FL chromosome, complete genomeintegrase catalytic subunit2e-1064.3
NC_016902:1165726:117256111725611173427867Escherichia coli KO11FL chromosome, complete genomeintegrase catalytic subunit2e-1064.3
NC_012967:1593101:160827816082781609144867Escherichia coli B str. REL606 chromosome, complete genomeputative transposase for IS32e-1064.3
NC_012759:461680:469121469121469987867Escherichia coli BW2952 chromosome, complete genomeIS3 element protein InsF2e-1064.3
NC_011083:4547825:458547045854704586336867Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,ISEc16, orfB2e-1064.3
CP002185:2919752:293243029324302933296867Escherichia coli W, complete genomeIS3 Transposase ORF22e-1064.3
NC_013716:5201097:523569452356945236560867Citrobacter rodentium ICC168, complete genomeIS3 transposase B2e-1064.3
NC_000913:558920:566361566361567227867Escherichia coli K12, complete genomeDLP12 prophage; IS3 element protein InsF2e-1064.3
CP002185:4035502:405304040530404053906867Escherichia coli W, complete genomeIS3 Transposase ORF22e-1064.3
NC_017328:2785309:279613527961352797001867Shigella flexneri 2002017 chromosome, complete genomeIS3 ORF23e-1063.9
NC_004337:2747917:275725327572532758119867Shigella flexneri 2a str. 301, complete genomeIS3 ORF23e-1063.9
NC_011205:4718239:472609847260984726313216Salmonella enterica subsp. enterica serovar Dublin str. CT_020218534e-1063.5
NC_016831:4517850:452590945259094526124216Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein4e-1063.5
NC_016818:2927500:293181229318122931979168Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, complete4e-1063.5
NC_013361:3651150:366468136646813665058378Escherichia coli O26:H11 str. 11368 chromosome, complete genome5e-1063.2
NC_020181:421941:430866430866431093228Enterobacter aerogenes EA1509E, complete genomeIS3 putative transposase8e-1062.4
NC_004431:2304280:231624523162452316472228Escherichia coli CFT073, complete genomeTransposase8e-1062.4
NC_012779:2127542:214378521437852144585801Edwardsiella ictaluri 93-146, complete genometransposase InsF for insertion sequence IS3A/B/C/D/E/fA2e-0960.8
NC_004851:191709:218767218767218919153Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceIS3 ORF28e-0959.3
NC_007946:2155454:216741021674102167637228Escherichia coli UTI89, complete genomeputative transposase9e-0958.9
NC_008253:2056734:206872220687222068949228Escherichia coli 536, complete genomeputative transposase9e-0958.9
NC_013941:3676146:370384837038483704105258Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeIS35e-0649.7
NC_013008:3911356:393411839341183934288171Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase7e-0649.3
NC_011353:3956630:397807739780773978247171Escherichia coli O157:H7 str. EC4115 chromosome, complete genometransposase InsF for insertion sequence IS3A/B/C/D/E/fA7e-0649.3