Pre_GI: BLASTP Hits

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Query: NC_010102:4477836:4488176 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 4488176, End: 4488382, Length: 207

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011083:4547825:455787945578794558085207Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,3e-24110
NC_013361:3651150:366508336650833665547465Escherichia coli O26:H11 str. 11368 chromosome, complete genome6e-1269.7
NC_011294:346915:348718348718349128411Salmonella enterica subsp. enterica serovar Enteritidis str4e-1993.2
NC_015761:2373967:238093723809372381320384Salmonella bongori NCTC 12419, complete genome3e-1890.5
NC_010498:2278306:228095222809522281785834Escherichia coli SMS-3-5, complete genome8e-1269.3
NC_011149:4474012:448409844840984484304207Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-23108
NC_013361:3287671:330811433081143308494381Escherichia coli O26:H11 str. 11368 chromosome, complete genome1e-1168.6
NC_006511:4465495:447119944711994472053855Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC4e-24110
NC_011205:1227373:123641812364181236957540Salmonella enterica subsp. enterica serovar Dublin str. CT_020218534e-1890.1
NC_011205:4718239:472660647266064727139534Salmonella enterica subsp. enterica serovar Dublin str. CT_020218535e-1579.7
NC_010473:498252:505693505693506559867Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; IS3 element protein InsF9e-1268.9
NC_000913:558920:566361566361567227867Escherichia coli K12, complete genomeDLP12 prophage; IS3 element protein InsF9e-1268.9
NC_016831:1865681:187488518748851875376492Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-1890.9
NC_020064:1409596:142179314217931422116324Serratia marcescens FGI94, complete genomehypothetical protein2e-1580.9
NC_004337:3590323:381087238108723811264393Shigella flexneri 2a str. 301, complete genomehypothetical protein2e-1270.9
NC_010468:4059436:406845740684574069323867Escherichia coli ATCC 8739, complete genomeIntegrase catalytic region9e-1268.9
CP002516:1165726:117256111725611173427867Escherichia coli KO11, complete genomeIntegrase catalytic region9e-1268.9
NC_012947:2189533:219422521942252195091867Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeIntegrase catalytic region9e-1268.9
CP002516:44744:521675216753033867Escherichia coli KO11, complete genomeIntegrase catalytic region9e-1268.9
NC_010468:2809125:281459028145902815456867Escherichia coli ATCC 8739, complete genomeIntegrase catalytic region9e-1268.9
NC_016902:1165726:117256111725611173427867Escherichia coli KO11FL chromosome, complete genomeintegrase catalytic subunit9e-1268.9
NC_016902:44744:521675216753033867Escherichia coli KO11FL chromosome, complete genomeintegrase catalytic subunit9e-1268.9
NC_011294:4560902:456926945692694569802534Salmonella enterica subsp. enterica serovar Enteritidis strIS1230 transposase5e-1579.7
NC_016831:4517850:452641745264174526950534Salmonella enterica subsp. enterica serovar Gallinarum/pullorumIS1230 transposase5e-1579.7
NC_010473:279948:290361290361291227867Escherichia coli str. K-12 substr. DH10B, complete genomeIS3 element protein InsF9e-1268.9
NC_011740:2859933:286084028608402861706867Escherichia fergusonii ATCC 35469, complete genomeIS3 element protein InsF2e-1374.3
NC_000913:303719:314811314811315677867Escherichia coli K12, complete genomeIS3 element protein InsF9e-1268.9
AC_000091:1083798:109469710946971095563867Escherichia coli W3110 DNA, complete genomeIS3 element protein InsF9e-1268.9
CU928160:2091249:211327021132702114136867Escherichia coli IAI1 chromosome, complete genomeIS3 element protein InsF2e-1167.4
AC_000091:558920:566361566361567227867Escherichia coli W3110 DNA, complete genomeIS3 element protein InsF9e-1268.9
NC_000913:1087062:109349810934981094364867Escherichia coli K12, complete genomeIS3 element protein InsF9e-1268.9
NC_011741:2091249:211327021132702114136867Escherichia coli IAI1 chromosome, complete genomeIS3 element protein InsF2e-1167.4
NC_012759:461680:469121469121469987867Escherichia coli BW2952 chromosome, complete genomeIS3 element protein InsF9e-1268.9
AC_000091:303719:314811314811315677867Escherichia coli W3110 DNA, complete genomeIS3 element protein InsF9e-1268.9
NC_017328:2785309:279613527961352797001867Shigella flexneri 2002017 chromosome, complete genomeIS3 ORF29e-1268.9
NC_008258:2905413:291114829111482912014867Shigella flexneri 5 str. 8401, complete genomeIS3 ORF29e-1268.9
NC_004337:2747917:275725327572532758119867Shigella flexneri 2a str. 301, complete genomeIS3 ORF29e-1268.9
NC_004337:1065609:106951210695121070378867Shigella flexneri 2a str. 301, complete genomeIS3 ORF29e-1268.9
NC_004337:3049118:310217931021793103045867Shigella flexneri 2a str. 301, complete genomeIS3 ORF29e-1268.9
NC_008258:1076922:108889210888921089758867Shigella flexneri 5 str. 8401, complete genomeIS3 ORF29e-1268.9
NC_017328:3088907:314054631405463141412867Shigella flexneri 2002017 chromosome, complete genomeIS3 orfB9e-1268.9
NC_004741:2741971:275188527518852752313429Shigella flexneri 2a str. 2457T, complete genomeIS3 orfB5e-1269.7
NC_004741:3041294:309166830916683092534867Shigella flexneri 2a str. 2457T, complete genomeIS3 orfB9e-1268.9
NC_013716:5201097:523569452356945236560867Citrobacter rodentium ICC168, complete genomeIS3 transposase B9e-1268.9
NC_016860:2917910:293454329345432935409867Salmonella enterica subsp. enterica serovar Typhimurium strIS3 transposase InsF3e-1890.5
CP002185:2919752:293243029324302933296867Escherichia coli W, complete genomeIS3 Transposase ORF29e-1268.9
CP002185:4035502:405304040530404053906867Escherichia coli W, complete genomeIS3 Transposase ORF29e-1268.9
NC_017328:1075535:109566610956661096532867Shigella flexneri 2002017 chromosome, complete genomeIS3, transposase orfB9e-1268.9
NC_009801:3013838:302677030267703027636867Escherichia coli E24377A, complete genomeIS3, transposase orfB1e-1168.9
NC_011083:4547825:458547045854704586336867Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,ISEc16, orfB9e-1268.9
NC_011149:1110642:112259011225901123456867Salmonella enterica subsp. enterica serovar Agona str. SL483,ISEc16, orfB1e-1891.7
NC_013364:3701895:371893437189343719800867Escherichia coli O111:H- str. 11128, complete genomeputative IS3 transposase InsF1e-1168.6
NC_016863:2844883:287946528794652880331867Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative transposase3e-1890.5
NC_003197:2894344:291097729109772911843867Salmonella typhimurium LT2, complete genomeputative transposase3e-1890.5
NC_016856:2896630:293121229312122932078867Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative transposase3e-1890.5
NC_012967:1593101:160827816082781609144867Escherichia coli B str. REL606 chromosome, complete genomeputative transposase for IS39e-1268.9
NC_008253:296500:303560303560304414855Escherichia coli 536, complete genometransposase6e-1269.7
NC_011205:371001:372687372687373214528Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853transposase4e-1993.2
NC_011415:3006794:302033130203313021197867Escherichia coli SE11 chromosome, complete genometransposase1e-1168.9
NC_020064:3998715:406440140644014065255855Serratia marcescens FGI94, complete genometransposase8e-1579
NC_006905:4486433:449651244965124496820309Salmonella enterica subsp. enterica serovar Choleraesuis strTransposase insF for insertion sequence IS3A/B/C/D3e-25114
NC_012125:4481808:449188744918874492195309Salmonella enterica subsp. enterica serovar Paratyphi C strainTransposase insF for insertion sequence IS3A/B/C/D3e-25114
NC_016832:4649432:465566746556674655873207Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Transposase InsF for insertion sequence IS3A/B/C/D/E/fA3e-24110
NC_011083:2847318:288548328854832886349867Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,transposase InsF for insertion sequence IS3A/B/C/D/E/fA3e-1890.5
NC_004431:1166568:117462811746281175380753Escherichia coli CFT073, complete genomeTransposase insF for insertion sequence IS3A/B/C/D/E/fA7e-1269.3
NC_012214:1650523:165905116590511659905855Erwinia pyrifoliae Ep1/96, complete genomeTransposase IS3/IS911, orf B1e-1271.6
NC_012214:1355500:136747713674771368205729Erwinia pyrifoliae Ep1/96, complete genomeTransposase IS3/IS911, probable orf B1e-1271.6
NC_012214:2221702:226107322610732261927855Erwinia pyrifoliae Ep1/96, complete genomeTransposase IS3/IS911, probale orf B1e-1271.6
CU928159:30700:341503415035016867Escherichia coli str. 55989 plasmid 55989p, complete genometransposase ORF B, IS39e-1268.9
NC_012214:1650523:166907016690701669924855Erwinia pyrifoliae Ep1/96, complete genomeTransposase, orf B1e-1271.6
NC_012214:1355500:136944813694481370302855Erwinia pyrifoliae Ep1/96, complete genomeTransposase, probable orf A1e-1271.6