Pre_GI: BLASTP Hits

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Query: NC_010102:4477836:4487417 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 4487417, End: 4487542, Length: 126

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016860:4649274:465928946592894659414126Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-1478.6
NC_011149:4474012:448333844833384483463126Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein1e-1478.6
NC_016856:4563435:457472545747254574850126Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein3e-1477
NC_011094:4442478:445180444518044451929126Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein9e-1475.5
NC_011080:4543000:455232845523284552453126Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein9e-1475.5