Pre_GI: BLASTP Hits

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Query: NC_010102:3955479:3959475 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 3959475, End: 3959594, Length: 120

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016857:4025767:403190740319074032026120Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein8e-1682.4
NC_011083:4020000:402480040248004024919120Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein8e-1682.4
NC_011149:3930358:393508539350853935204120Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein8e-1682.4
NC_011080:3976441:398117639811763981295120Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein8e-1682.4
NC_016832:3798475:381230038123003812419120Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein5e-1579.7
NC_016831:3779611:379435137943513794470120Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative lipoprotein5e-1579.7
NC_011205:4038884:404361840436184043737120Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein5e-1579.7
NC_011094:3887648:389238338923833892502120Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-1477.8