Pre_GI: BLASTP Hits

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Query: NC_010102:2322866:2340356 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 2340356, End: 2341096, Length: 741

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:775636:782389782389783129741Salmonella enterica subsp. enterica serovar Typhimurium str. 798transport protein3e-139494
NC_003198:751779:758250758250758990741Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein3e-139494
NC_003197:776238:782991782991783731741Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein3e-139494
NC_004631:2205821:222210522221052222845741Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein3e-139494
NC_016810:775649:782402782402783142741Salmonella enterica subsp. enterica serovar Typhimurium strputative transport protein3e-139494
NC_016856:776735:783488783488784228741Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein3e-139494
NC_016857:775649:782402782402783142741Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein3e-139494
NC_016860:816000:821821821821822561741Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-139494
NC_016863:776734:783487783487784227741Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein3e-139494
NC_011083:824659:831401831401832141741Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein5e-138490
NC_006511:2090058:210681421068142107554741Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein3e-137487
NC_011147:2085241:210199721019972102737741Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein3e-137487
NC_016832:2201860:221887022188702219568699Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein1e-131469
NC_011080:780850:787644787644788342699Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein2e-130464
NC_011094:842038:848833848833849531699Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein7e-129459
NC_009800:349592:378463378463379224762Escherichia coli HS, complete genomehypothetical protein2e-35149
NC_011415:351810:361969361969362730762Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-35149
NC_008253:334467:404549404549405310762Escherichia coli 536, complete genomeputative cytoplasmic protein5e-35147
NC_008563:318993:349445349445350206762Escherichia coli APEC O1, complete genomehypothetical protein3e-34145
NC_007946:289425:347853347853348614762Escherichia coli UTI89, complete genomehypothetical protein3e-34145
NC_004431:364000:412381412381413142762Escherichia coli CFT073, complete genomehypothetical protein3e-33141