Pre_GI: BLASTP Hits

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Query: NC_010102:1829357:1843400 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 1843400, End: 1844080, Length: 681

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:1867456:189151518915151892195681Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative bacteriophage protein5e-127453
NC_011080:1166951:117130711713071171987681Salmonella enterica subsp. enterica serovar Newport str. SL254,putative bacteriophage protein2e-125447
NC_011741:2715246:272786027278602728540681Escherichia coli IAI1 chromosome, complete genomehypothetical protein5e-105380
CU928160:2715246:272786027278602728540681Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein from bacteriophage origin5e-105380
NC_016845:2306744:231686323168632317531669Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative bacteriophage protein1e-57222
NC_007712:3067000:307649630764963077149654Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein9e-47186
NC_007712:2806500:282694828269482827601654Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein9e-47186
NC_007712:1893066:190907119090711909724654Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein9e-47186
NC_009255:1369200:138497713849771385639663Burkholderia vietnamiensis G4 chromosome 2, complete sequenceputative bacteriophage protein2e-45182
NC_009720:4033983:406940640694064070110705Xanthobacter autotrophicus Py2, complete genomeputative bacteriophage protein5e-35147
NC_013008:306953:308198308198308509312Escherichia coli O157:H7 str. TW14359 chromosome, complete genomereplication protein P for prophage CP-933H5e-34144
NC_011353:305820:308198308198308509312Escherichia coli O157:H7 str. EC4115 chromosome, complete genomereplication protein P for prophage CP-933H5e-34144
NC_002655:301940:304318304318304629312Escherichia coli O157:H7 EDL933, complete genomepartial replication protein P for prophage CP-933H5e-34144
NC_020211:2123819:213181221318122132390579Serratia marcescens WW4, complete genomeputative bacteriophage protein8e-32137
NC_007712:3382000:338206233820623382718657Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein2e-0859.7