Pre_GI: BLASTP Hits

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Query: NC_010102:1616530:1638826 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 1638826, End: 1640037, Length: 1212

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011294:1723852:1746087174608717472981212Salmonella enterica subsp. enterica serovar Enteritidis strpathogenicity island protein0820
NC_011274:1763676:1785911178591117871221212Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91pathogenicity island protein0820
NC_004631:1325817:1336343133634313375541212Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative pathogenicity island protein0820
NC_006905:1509093:1519619151961915208301212Salmonella enterica subsp. enterica serovar Choleraesuis strSecretion system apparatus SsaD0820
NC_003198:1621347:1643582164358216447931212Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative pathogenicity island protein0820
NC_003197:1471349:1481876148187614830871212Salmonella typhimurium LT2, complete genomevirulence protein0816
NC_016810:1428201:1438728143872814399391212Salmonella enterica subsp. enterica serovar Typhimurium strputative pathogenicity island protein0816
NC_016856:1481325:1491852149185214930631212Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Svirulence protein0816
NC_016857:1428201:1438728143872814399391212Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74virulence protein0816
NC_016860:1469066:1479563147956314807741212Salmonella enterica subsp. enterica serovar Typhimurium strvirulence protein0816
NC_016863:1429516:1440043144004314412541212Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1virulence protein0816
NC_011147:1502096:1524391152439115256021212Salmonella enterica subsp. enterica serovar Paratyphi A strpathogenicity island protein0813
NC_006511:1506915:1529210152921015304211212Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative pathogenicity island protein0813
NC_011205:1852665:1874900187490018760991200Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853type III secretion apparatus protein, YscD/HrpQ family0813
NC_011080:1470794:1481329148132914825281200Salmonella enterica subsp. enterica serovar Newport str. SL254,type III secretion apparatus protein, YscD/HrpQ family0813
NC_016832:1324820:1335328133532813365271200Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Type III secretion apparatus protein, YscD/HrpQ0812
NC_012125:2360815:2383050238305023842491200Salmonella enterica subsp. enterica serovar Paratyphi C strainpathogenicity island protein0812
NC_016831:1236786:1247322124732212485211200Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative pathogenicity island protein0811
NC_011083:1476894:1487403148740314886021200Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,type III secretion apparatus protein, YscD/HrpQ family0810
NC_017046:1428272:1438811143881114400101200Salmonella enterica subsp. enterica serovar Typhimurium str. 798pathogenicity island protein0809
NC_011094:1435347:1445855144585514470541200Salmonella enterica subsp. enterica serovar Schwarzengrund strtype III secretion apparatus protein, YscD/HrpQ family protein0807
NC_011149:1710601:1732896173289617340951200Salmonella enterica subsp. enterica serovar Agona str. SL483,type III secretion apparatus protein, YscD/HrpQ family0807
NC_010067:1507823:1533538153353815347491212Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein0750
NC_014012:2565329:2584524258452425857321209Shewanella violacea DSS12, complete genometype III secretion system apparatus protein, YscD/HrpQ family6e-24112
NC_011601:4096427:4108906410890641101261221Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeT3SS structure protein EscD1e-23111
NC_002695:4584177:4594974459497445961941221Escherichia coli O157:H7 str. Sakai, complete genomeEscD5e-2099
NC_002655:4653160:4663957466395746651771221Escherichia coli O157:H7 EDL933, complete genomeescD5e-2099
NC_011353:4688000:4698078469807846992981221Escherichia coli O157:H7 str. EC4115 chromosome, complete genometype III secretion apparatus protein, YscD/HrpQ family5e-2099
NC_013008:4643825:4654119465411946553391221Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeLEE-encoded type III secretion system component5e-2099
NC_013941:4470932:4482484448248444837041221Escherichia coli O55:H7 str. CB9615 chromosome, complete genomePas5e-2099
NC_013364:3701895:3726522372652237277421221Escherichia coli O111:H- str. 11128, complete genomeT3SS structure protein EscD2e-1790.9
NC_013361:5319497:5357699535769953589191221Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS structure protein EscD4e-1789.4
NC_013353:3669500:3684881368488136861011221Escherichia coli O103:H2 str. 12009, complete genomeT3SS structure protein EscD4e-1789.4
AP010958:3669500:3684881368488136861011221Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS structure protein EscD4e-1789.4
NC_005126:4423964:4445948444594844472161269Photorhabdus luminescens subsp. laumondii TTO1, complete genomeType III secretion component protein SctD5e-0652.8