Pre_GI: BLASTP Hits

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Query: NC_010102:1616530:1638576 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 1638576, End: 1638791, Length: 216

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:1429516:144126214412621441504243Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1secretion system effector6e-2199.4
NC_003197:1471349:148309514830951483337243Salmonella typhimurium LT2, complete genomesecretion system effector6e-2199.4
NC_011294:1723852:174583717458371746079243Salmonella enterica subsp. enterica serovar Enteritidis strsecretion system protein6e-2199.4
NC_016810:1428201:143994714399471440189243Salmonella enterica subsp. enterica serovar Typhimurium strtype three secretion system protein6e-2199.4
NC_016856:1481325:149307114930711493313243Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Ssecretion system effector6e-2199.4
NC_016857:1428201:143994714399471440189243Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74secretion system effector6e-2199.4
NC_016860:1469066:148078214807821481024243Salmonella enterica subsp. enterica serovar Typhimurium strputative secretion system protein6e-2199.4
NC_011205:1852665:187465018746501874883234Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853YseE family type III secretion system protein9e-2199
NC_011080:1470794:148254514825451482778234Salmonella enterica subsp. enterica serovar Newport str. SL254,type III secretion system protein, YseE family9e-2199
NC_006905:1509093:152083815208381521080243Salmonella enterica subsp. enterica serovar Choleraesuis strSecretion system effector SsaE1e-2098.6
NC_012125:2360815:238280023828002383042243Salmonella enterica subsp. enterica serovar Paratyphi C strainsecretion system protein1e-2098.6
NC_017046:1428272:144004514400451440260216Salmonella enterica subsp. enterica serovar Typhimurium str. 798type three secretion system protein1e-2098.6
NC_011083:1476894:148861014886101488852243Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,type III secretion system protein, YseE family2e-2098.2
NC_004631:1325817:133756213375621337804243Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative secretion system protein1e-2098.2
NC_011149:1710601:173264617326461732888243Salmonella enterica subsp. enterica serovar Agona str. SL483,type III secretion system protein, YseE family1e-2098.2
NC_003198:1621347:164333216433321643574243Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative secretion system protein1e-2098.2
NC_011094:1435347:144706214470621447304243Salmonella enterica subsp. enterica serovar Schwarzengrund strtype III secretion system protein, YseE family protein1e-2098.2
NC_016832:1324820:133653513365351336777243Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Type III secretion system protein, YseE1e-2098.2
NC_011274:1763676:178566117856611785903243Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91secretion system protein5e-2096.3
NC_016831:1236786:124853812485381248771234Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative secretion system protein6e-2096.3
NC_011147:1502096:152414115241411524383243Salmonella enterica subsp. enterica serovar Paratyphi A strsecretion system protein9e-2095.5
NC_006511:1506915:152896015289601529202243Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative secretion system protein9e-2095.5
NC_010067:1507823:153327415332741533537264Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein9e-1785.5