Pre_GI: BLASTP Hits

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Query: NC_010102:1616530:1634859 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 1634859, End: 1635446, Length: 588

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:2360815:237914423791442379731588Salmonella enterica subsp. enterica serovar Paratyphi C strainpathogenicity island effector protein4e-81300
NC_006905:1509093:152415515241551524742588Salmonella enterica subsp. enterica serovar Choleraesuis strSecretion system effector SseD9e-81299
NC_003197:1471349:148646714864671487054588Salmonella typhimurium LT2, complete genometranslocation machinery component1e-79295
NC_011094:1435347:145037214503721450959588Salmonella enterica subsp. enterica serovar Schwarzengrund strpathogenicity island 2 effector protein SseD1e-79295
NC_011294:1723852:174218117421811742768588Salmonella enterica subsp. enterica serovar Enteritidis strpathogenicity island effector protein1e-79295
NC_016810:1428201:144331914433191443906588Salmonella enterica subsp. enterica serovar Typhimurium strputative pathogenicity island effector protein1e-79295
NC_016856:1481325:149644314964431497030588Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Stranslocation machinery component1e-79295
NC_016857:1428201:144331914433191443906588Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74translocation machinery component1e-79295
NC_016863:1429516:144463414446341445221588Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1translocation machinery component1e-79295
NC_004631:1325817:134087313408731341460588Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative pathogenicity island effector protein5e-79293
NC_006511:1506915:152524415252441525831588Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative pathogenicity island effector protein5e-79293
NC_003198:1621347:163967616396761640263588Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative pathogenicity island effector protein5e-79293
NC_011147:1502096:152042515204251521012588Salmonella enterica subsp. enterica serovar Paratyphi A strpathogenicity island effector protein5e-79293
NC_011274:1763676:178200517820051782592588Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91pathogenicity island effector protein8e-79292
NC_011149:1710601:172893017289301729517588Salmonella enterica subsp. enterica serovar Agona str. SL483,translocation machinery component4e-78290
NC_011080:1470794:148599114859911486494504Salmonella enterica subsp. enterica serovar Newport str. SL254,translocation machinery component2e-75281
NC_016860:1469066:148423814842381484741504Salmonella enterica subsp. enterica serovar Typhimurium strputative pathogenicity island effector protein2e-75281
NC_017046:1428272:144347414434741443977504Salmonella enterica subsp. enterica serovar Typhimurium str. 798pathogenicity island effector protein2e-75281
NC_016832:1324820:133993013399301340433504Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Secreted effector protein sseD4e-75280
NC_016831:1236786:125192412519241252427504Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative pathogenicity island effector protein7e-75279
NC_011205:1852665:187099418709941871497504Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853translocation machinery component3e-74277
NC_011083:1476894:149206614920661492569504Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,translocation machinery component3e-74277
NC_010067:1507823:152975215297521530255504Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-49195
NC_014012:2565329:257976225797622580409648Shewanella violacea DSS12, complete genomehypothetical protein3e-1168.2