Pre_GI: BLASTP Hits

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Query: NC_010102:1616530:1623237 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 1623237, End: 1624205, Length: 969

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:1429516:145587514558751456843969Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1type III secretion system protein6e-180630
NC_016860:1469066:149539514953951496363969Salmonella enterica subsp. enterica serovar Typhimurium strtype III secretion system protein6e-180630
NC_016856:1481325:150768415076841508652969Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Stype III secretion system protein6e-180630
NC_003197:1471349:149770814977081498676969Salmonella typhimurium LT2, complete genometype III secretion protein6e-180630
NC_003198:1621347:162805416280541629022969Salmonella enterica subsp. enterica serovar Typhi str. CT18,type III secretion protein2e-179628
NC_012125:2360815:236752223675222368490969Salmonella enterica subsp. enterica serovar Paratyphi C straintype III secretion system protein2e-179627
NC_011205:1852665:185937218593721860340969Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853type III secretion system protein6e-179626
NC_006905:1509093:153539615353961536364969Salmonella enterica subsp. enterica serovar Choleraesuis strtype III secretion protein6e-179626
NC_006511:1506915:151362215136221514590969Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCtype III secretion protein1e-178625
NC_011147:1502096:150880315088031509771969Salmonella enterica subsp. enterica serovar Paratyphi A strtype III secretion system protein1e-178625
NC_011080:1470794:149714814971481498116969Salmonella enterica subsp. enterica serovar Newport str. SL254,type III secretion apparatus protein, YscQ/HrcQ family3e-178624
NC_011149:1710601:171730817173081718276969Salmonella enterica subsp. enterica serovar Agona str. SL483,type III secretion apparatus protein, YscQ/HrcQ family4e-178624
NC_011294:1723852:173055917305591731527969Salmonella enterica subsp. enterica serovar Enteritidis strtype III secretion system protein8e-178622
NC_011274:1763676:177038317703831771351969Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91type III secretion system protein8e-178622
NC_016831:1236786:126308112630811264049969Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative type III secretion protein1e-177622
NC_011094:1435347:146161214616121462580969Salmonella enterica subsp. enterica serovar Schwarzengrund strtype III secretion system protein1e-177622
NC_010067:1507823:151811015181101519078969Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-157553