Pre_GI: BLASTN Hits

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Query: NC_010067:660659 Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete

Start: 660659, End: 688515, Length: 27857

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This subspecies (IIIa) is usually found associated with reptiles, although contact with infected animals can result in the spread of the organism to humans or animals such as turkeys. This strain was originally isolated from a cornsnake in 1986 in Oregon, USA. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_006511:682863*68286370873225870Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC07422BLASTN svgBLASTP svg
NC_010102:683444*68344472210838665Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,05491BLASTN svgBLASTP svg
NC_004631:685357*68535771085325497Salmonella enterica subsp. enterica serovar Typhi Ty2, complete05067BLASTN svgBLASTP svg
NC_011083:23750612375061241289137831Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,05043BLASTN svgBLASTP svg
NC_003197:23274742327474236419536722Salmonella typhimurium LT2, complete genome05027BLASTN svgBLASTP svg
NC_011149:22945002294500231681122312Salmonella enterica subsp. enterica serovar Agona str. SL483,02912BLASTN svgBLASTP svg
NC_014121:35538093553809358001526207Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete6e-122446BLASTN svgBLASTP svg
NC_020064:3157656*3157656318828830633Serratia marcescens FGI94, complete genome2e-57232BLASTN svgBLASTP svg
NC_013961:2370994*2370994240176230769Erwinia amylovora, complete genome3e-46194BLASTN svgBLASTP svg
NC_015566:3622385*3622385364177919395Serratia sp. AS12 chromosome, complete genome3e-46194BLASTN svgBLASTP svg
NC_012912:2800884*2800884281980818925Dickeya zeae Ech1591, complete genome8e-41176BLASTN svgBLASTP svg
NC_012917:1840172*1840172189159251421Pectobacterium carotovorum subsp. carotovorum PC1, complete genome1e-36163BLASTN svgBLASTP svg
NC_008577:2910383*2910383292929118909Shewanella sp. ANA-3 chromosome 1, complete sequence4e-18101BLASTN svgBLASTP svg
NC_009092:1684467*1684467170308618620Shewanella loihica PV-4, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_006512:728281*72828175150523225Idiomarina loihiensis L2TR, complete genome6e-1797.6BLASTN svgBLASTP svg
NC_015566:3659318*3659318367796918652Serratia sp. AS12 chromosome, complete genome9e-1693.7BLASTN svgBLASTP svg
NC_009778:95998295998298509925118Enterobacter sakazakii ATCC BAA-894, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_004431:30126683012668303118918522Escherichia coli CFT073, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_007946:28947932894793291753922747Escherichia coli UTI89, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_008563:29099452909945293044120497Escherichia coli APEC O1, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_008228:2295841*2295841231867322833Pseudoalteromonas atlantica T6c, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_014837:1570500*1570500160135230853Pantoea sp. At-9b chromosome, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_010998:11105211105213523024179Rhizobium etli CIAT 652 plasmid pA, complete sequence1e-1179.8BLASTN svgBLASTP svg
NC_014972:1621850*1621850164648324634Desulfobulbus propionicus DSM 2032 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_011769:2294387*2294387231565121265Desulfovibrio vulgaris str. 'Miyazaki F', complete genome1e-0869.9BLASTN svgBLASTP svg
NC_018691:3525430*3525430358162756198Alcanivorax dieselolei B5 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_009800:2788164*2788164280740719244Escherichia coli HS, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_013166:1841446*1841446185969318248Kangiella koreensis DSM 16069, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004757:1021355*1021355105233830984Nitrosomonas europaea ATCC 19718, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_008686:405159*40515944047735319Paracoccus denitrificans PD1222 chromosome 1, complete sequence8e-0763.9BLASTN svgBLASTP svg
NC_010162:11908749119087491195333644588Sorangium cellulosum 'So ce 56', complete genome8e-0763.9BLASTN svgBLASTP svg
NC_015682:205900*20590025109945200Thermodesulfobacterium sp. OPB45 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_020260:1535394*1535394155809922706Cronobacter sakazakii Sp291, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_020126:2883194*2883194290469121498Myxococcus stipitatus DSM 14675, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015682:1074263*1074263109616721905Thermodesulfobacterium sp. OPB45 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015554:12154011215401123622120821Alteromonas sp. SN2 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012796:985000*985000100352118522Desulfovibrio magneticus RS-1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009778:14778411477841150009922259Enterobacter sakazakii ATCC BAA-894, complete genome3e-0661.9BLASTN svgBLASTP svg