Pre_GI: BLASTN Hits

Some Help

Query: NC_010067:3056774 Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete

Start: 3056774, End: 3081720, Length: 24947

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This subspecies (IIIa) is usually found associated with reptiles, although contact with infected animals can result in the spread of the organism to humans or animals such as turkeys. This strain was originally isolated from a cornsnake in 1986 in Oregon, USA. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009792:32453683245368328222336856Citrobacter koseri ATCC BAA-895, complete genome04365BLASTN svgBLASTP svg
CU928160:4570498*4570498461509944602Escherichia coli IAI1 chromosome, complete genome0664BLASTN svgBLASTP svg
AC_000091:4472000*4472000449474322744Escherichia coli W3110 DNA, complete genome0668BLASTN svgBLASTP svg
NC_008563:49051864905186492360518420Escherichia coli APEC O1, complete genome0672BLASTN svgBLASTP svg
NC_004337:4374500*4374500439909924600Shigella flexneri 2a str. 301, complete genome0696BLASTN svgBLASTP svg
NC_008258:4345400*4345400436989824499Shigella flexneri 5 str. 8401, complete genome0696BLASTN svgBLASTP svg
NC_010498:4821519*4821519484497023452Escherichia coli SMS-3-5, complete genome0706BLASTN svgBLASTP svg
NC_003198:4676536*4676536471603539500Salmonella enterica subsp. enterica serovar Typhi str. CT18,0983BLASTN svgBLASTP svg
NC_004631:4661000*4661000468421223213Salmonella enterica subsp. enterica serovar Typhi Ty2, complete0983BLASTN svgBLASTP svg
NC_010102:4745949*4745949476837922431Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,02577BLASTN svgBLASTP svg
NC_011080:47032664703266472876525500Salmonella enterica subsp. enterica serovar Newport str. SL254,02977BLASTN svgBLASTP svg
NC_006905:4638707*4638707467273934033Salmonella enterica subsp. enterica serovar Choleraesuis str02993BLASTN svgBLASTP svg
NC_011149:46774124677412471244835037Salmonella enterica subsp. enterica serovar Agona str. SL483,03150BLASTN svgBLASTP svg
NC_013716:3512950*3512950355955346604Citrobacter rodentium ICC168, complete genome03709BLASTN svgBLASTP svg
NC_007613:4217557*4217557425611838562Shigella boydii Sb227, complete genome2e-180640BLASTN svgBLASTP svg
NC_020063:4127161*4127161415360026440Enterobacteriaceae bacterium strain FGI 57, complete genome2e-176626BLASTN svgBLASTP svg
CP002797:4603787*4603787464340739621Escherichia coli NA114, complete genome6e-171609BLASTN svgBLASTP svg
NC_011750:4947500*4947500496714419645Escherichia coli IAI39 chromosome, complete genome2e-93351BLASTN svgBLASTP svg
NC_013956:595320*59532063373038411Pantoea ananatis LMG 20103 chromosome, complete genome1e-88335BLASTN svgBLASTP svg
NC_010694:436500*43650046233725838Erwinia tasmaniensis, complete genome2e-87331BLASTN svgBLASTP svg
NC_009648:5119271*5119271515776838498Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome2e-78301BLASTN svgBLASTP svg
NC_013850:4829455*4829455485950430050Klebsiella variicola At-22 chromosome, complete genome7e-78299BLASTN svgBLASTP svg
NC_004741:4364235*4364235438964325409Shigella flexneri 2a str. 2457T, complete genome1e-76295BLASTN svgBLASTP svg
NC_013961:441719*44171947879337075Erwinia amylovora, complete genome1e-76295BLASTN svgBLASTP svg
CP002185:4750571*4750571477251221942Escherichia coli W, complete genome4e-70274BLASTN svgBLASTP svg
NC_015663:2090442*2090442212127330832Enterobacter aerogenes KCTC 2190 chromosome, complete genome6e-69270BLASTN svgBLASTP svg
NC_009800:4529504*4529504454809918596Escherichia coli HS, complete genome6e-69270BLASTN svgBLASTP svg
NC_015968:511282*51128254179030509Enterobacter asburiae LF7a chromosome, complete genome8e-53216BLASTN svgBLASTP svg
NC_014121:677799*67779969989822100Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete3e-52214BLASTN svgBLASTP svg
NC_013421:478586*47858650902930444Pectobacterium wasabiae WPP163, complete genome1e-45192BLASTN svgBLASTP svg
NC_020211:554736*55473659042335688Serratia marcescens WW4, complete genome5e-45190BLASTN svgBLASTP svg
NC_012912:4194821*4194821421439319573Dickeya zeae Ech1591, complete genome2e-44188BLASTN svgBLASTP svg
NC_014500:443874*44387446959925726Dickeya dadantii 3937 chromosome, complete genome7e-44186BLASTN svgBLASTP svg
NC_013421:13978411397841141728819448Pectobacterium wasabiae WPP163, complete genome3e-43184BLASTN svgBLASTP svg
NC_012880:4117376*4117376413569218317Dickeya dadantii Ech703, complete genome1e-42182BLASTN svgBLASTP svg
NC_013282:551219*55121958904737829Cronobacter turicensis, complete genome1e-42182BLASTN svgBLASTP svg
NC_013592:446092*44609246819222101Dickeya dadantii Ech586, complete genome1e-42182BLASTN svgBLASTP svg
NC_020064:521500*52150055828736788Serratia marcescens FGI94, complete genome1e-42182BLASTN svgBLASTP svg
NC_009832:622969*62296965041627448Serratia proteamaculans 568, complete genome2e-41178BLASTN svgBLASTP svg
NC_015567:547500*54750057779630297Serratia sp. AS9 chromosome, complete genome7e-41176BLASTN svgBLASTP svg
NC_015566:547387*54738757761030224Serratia sp. AS12 chromosome, complete genome7e-41176BLASTN svgBLASTP svg
NC_014562:3985500*3985500400317017671Pantoea vagans C9-1 chromosome, complete genome4e-39170BLASTN svgBLASTP svg
NC_004547:442927*44292748635443428Erwinia carotovora subsp. atroseptica SCRI1043, complete genome6e-32147BLASTN svgBLASTP svg
NC_015061:4203767*4203767424223938473Rahnella sp. Y9602 chromosome, complete genome2e-29139BLASTN svgBLASTP svg
NC_007712:3629358*3629358365546826111Sodalis glossinidius str. 'morsitans', complete genome2e-19105BLASTN svgBLASTP svg
NC_014228:34421593442159346772325565Xenorhabdus nematophila ATCC 19061, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_012214:2805297*2805297283239127095Erwinia pyrifoliae Ep1/96, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_012214:13555001355500137677021271Erwinia pyrifoliae Ep1/96, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_012214:12126161212616123625023635Erwinia pyrifoliae Ep1/96, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_010524:2117347*2117347214204224696Leptothrix cholodnii SP-6, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_009800:289000*28900031038921390Escherichia coli HS, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_009800:2788164*2788164280740719244Escherichia coli HS, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_009800:20493462049346207518725842Escherichia coli HS, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_009800:1254409*1254409127914624738Escherichia coli HS, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_008752:35110063511006353392522920Acidovorax avenae subsp. citrulli AAC00-1, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_004741:20097692009769203209922331Shigella flexneri 2a str. 2457T, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_009800:32011532011533924219128Escherichia coli HS, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_009800:349592*34959238017230581Escherichia coli HS, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_012214:1117325*1117325114343626112Erwinia pyrifoliae Ep1/96, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_014121:4299500*4299500433477235273Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete5e-1177.8BLASTN svgBLASTP svg
NC_014121:398012*39801242358425573Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete5e-1177.8BLASTN svgBLASTP svg
NC_014121:36275883627588367459947012Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete5e-1177.8BLASTN svgBLASTP svg
NC_014121:35538093553809358001526207Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete5e-1177.8BLASTN svgBLASTP svg
NC_014121:2745097*2745097276822023124Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete5e-1177.8BLASTN svgBLASTP svg
NC_014107:17117017117019899927830Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A,5e-1177.8BLASTN svgBLASTP svg
NC_013956:32733403273340330380130462Pantoea ananatis LMG 20103 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
AC_000091:27332527332530179728473Escherichia coli W3110 DNA, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_000913:27207127207130179729727Escherichia coli K12, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_010473:24742924742927209924671Escherichia coli str. K-12 substr. DH10B, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_014228:33538963353896338544531550Xenorhabdus nematophila ATCC 19061, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_004431:4270305*4270305431798947685Escherichia coli CFT073, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010067:3204682*3204682322388819207Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete1e-0869.9BLASTN svgBLASTP svg
NC_010498:22783062278306230147623171Escherichia coli SMS-3-5, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013716:27645502764550279838233833Citrobacter rodentium ICC168, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014121:48950048950052159932100Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete1e-0869.9BLASTN svgBLASTP svg
NC_014121:23304512330451236009929649Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete5e-0867.9BLASTN svgBLASTP svg
NC_014228:33915003391500342834536846Xenorhabdus nematophila ATCC 19061, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003197:60604860604862559319546Salmonella typhimurium LT2, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_003198:598000*59800061851020511Salmonella enterica subsp. enterica serovar Typhi str. CT18,7e-0763.9BLASTN svgBLASTP svg
NC_004631:23663352366335238728320949Salmonella enterica subsp. enterica serovar Typhi Ty2, complete7e-0763.9BLASTN svgBLASTP svg
NC_006511:2251022*2251022227421723196Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC7e-0763.9BLASTN svgBLASTP svg
NC_010102:24954412495441251396918529Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,7e-0763.9BLASTN svgBLASTP svg
NC_011083:654479*65447967531220834Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,7e-0763.9BLASTN svgBLASTP svg
NC_015567:34650034650038359937100Serratia sp. AS9 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015566:34508434508438359938516Serratia sp. AS12 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010554:2789722*2789722282150731786Proteus mirabilis HI4320, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009832:45647524564752461773352982Serratia proteamaculans 568, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008258:18738051873805189655222748Shigella flexneri 5 str. 8401, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006368:32119983211998323023918242Legionella pneumophila str. Paris, complete genome3e-0661.9BLASTN svgBLASTP svg