Pre_GI: BLASTN Hits

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Query: NC_010067:1116148 Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete

Start: 1116148, End: 1139330, Length: 23183

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This subspecies (IIIa) is usually found associated with reptiles, although contact with infected animals can result in the spread of the organism to humans or animals such as turkeys. This strain was originally isolated from a cornsnake in 1986 in Oregon, USA. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003198:1771432*1771432180593534504Salmonella enterica subsp. enterica serovar Typhi str. CT18,08419BLASTN svgBLASTP svg
NC_015663:3586836*3586836361030823473Enterobacter aerogenes KCTC 2190 chromosome, complete genome01970BLASTN svgBLASTP svg
NC_021066:839734*83973487672436991Raoultella ornithinolytica B6, complete genome01905BLASTN svgBLASTP svg
NC_014121:1589389*1589389162248733099Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete01695BLASTN svgBLASTP svg
NC_013716:1918664*1918664194320924546Citrobacter rodentium ICC168, complete genome01520BLASTN svgBLASTP svg
NC_014500:2479814*2479814250755827745Dickeya dadantii 3937 chromosome, complete genome0906BLASTN svgBLASTP svg
NC_020064:2697116*2697116272016423049Serratia marcescens FGI94, complete genome0848BLASTN svgBLASTP svg
NC_004547:2470978*2470978249481623839Erwinia carotovora subsp. atroseptica SCRI1043, complete genome0844BLASTN svgBLASTP svg
NC_012214:2221702*2221702227363551934Erwinia pyrifoliae Ep1/96, complete genome0825BLASTN svgBLASTP svg
NC_013961:1622616*1622616167386551250Erwinia amylovora, complete genome0809BLASTN svgBLASTP svg
NC_013421:2613137*2613137263682223686Pectobacterium wasabiae WPP163, complete genome0805BLASTN svgBLASTP svg
NC_013508:1491945*1491945152068628742Edwardsiella tarda EIB202, complete genome0791BLASTN svgBLASTP svg
NC_015224:2095816*2095816211873722922Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,0694BLASTN svgBLASTP svg
NC_006155:35961203596120363277836659Yersinia pseudotuberculosis IP 32953, complete genome2e-179636BLASTN svgBLASTP svg
NC_010634:35098803509880354653836659Yersinia pseudotuberculosis PB1/+, complete genome6e-177628BLASTN svgBLASTP svg
NC_010634:2252329*2252329227409821770Yersinia pseudotuberculosis PB1/+, complete genome5e-162579BLASTN svgBLASTP svg
NC_006155:23341222334122235510620985Yersinia pseudotuberculosis IP 32953, complete genome3e-157563BLASTN svgBLASTP svg
NC_010694:21380002138000218529147292Erwinia tasmaniensis, complete genome4e-144519BLASTN svgBLASTP svg
NC_010465:11181471118147115423036084Yersinia pseudotuberculosis YPIII, complete genome1e-113418BLASTN svgBLASTP svg
NC_008149:33732293373229340909935871Yersinia pestis Nepal516, complete genome1e-113418BLASTN svgBLASTP svg
NC_004088:35053833505383354055935177Yersinia pestis KIM, complete genome1e-113418BLASTN svgBLASTP svg
NC_003143:87536787536791053535169Yersinia pestis CO92, complete genome1e-113418BLASTN svgBLASTP svg
NC_020064:41255004125500414419318694Serratia marcescens FGI94, complete genome1e-39172BLASTN svgBLASTP svg
NC_010645:558974*55897458259923626Bordetella avium 197N, complete genome1e-36163BLASTN svgBLASTP svg
NC_002929:3305682*3305682333485129170Bordetella pertussis Tohama I, complete genome4e-36161BLASTN svgBLASTP svg
NC_004578:1190000*1190000121945029451Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-31145BLASTN svgBLASTP svg
NC_002927:960369*96036999159931231Bordetella bronchiseptica RB50, complete genome2e-31145BLASTN svgBLASTP svg
NC_020209:47504*4750412622978726Pseudomonas poae RE*1-1-14, complete genome9e-31143BLASTN svgBLASTP svg
NC_012660:819381*81938184312223742Pseudomonas fluorescens SBW25 chromosome, complete genome2e-28135BLASTN svgBLASTP svg
NC_010170:4196197*4196197422572429528Bordetella petrii, complete genome4e-27131BLASTN svgBLASTP svg
NC_004547:2285092*2285092230801122920Erwinia carotovora subsp. atroseptica SCRI1043, complete genome3e-24121BLASTN svgBLASTP svg
NC_009434:3434381*3434381346411529735Pseudomonas stutzeri A1501, complete genome3e-24121BLASTN svgBLASTP svg
NC_015410:1202370*1202370122824825879Pseudomonas mendocina NK-01 chromosome, complete genome2e-22115BLASTN svgBLASTP svg
NC_003197:1611302*1611302163313721836Salmonella typhimurium LT2, complete genome1e-20109BLASTN svgBLASTP svg
NC_010067:14140001414000143680422805Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete5e-20107BLASTN svgBLASTP svg
NC_009439:1174432*1174432119973625305Pseudomonas mendocina ymp, complete genome5e-20107BLASTN svgBLASTP svg
NC_013851:26108472610847263605825212Allochromatium vinosum DSM 180 chromosome, complete genome2e-19105BLASTN svgBLASTP svg
NC_003198:14632531463253148503221780Salmonella enterica subsp. enterica serovar Typhi str. CT18,3e-18101BLASTN svgBLASTP svg
NC_009720:2424975*2424975244520720233Xanthobacter autotrophicus Py2, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_015733:864959*86495989931634358Pseudomonas putida S16 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_007973:14117141411714144204530332Ralstonia metallidurans CH34 chromosome 1, complete sequence5e-1487.7BLASTN svgBLASTP svg
NC_014733:2095996*2095996211863222637Methylovorus sp. MP688 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010995:764567*76456778991125345Cellvibrio japonicus Ueda107, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_007643:4294818*4294818431506320246Rhodospirillum rubrum ATCC 11170, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_014541:19968111996811202159924789Ferrimonas balearica DSM 9799 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_012969:2136243*2136243222535089108Methylovorus glucosetrophus SIP3-4 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_008687:25669225669228607929388Paracoccus denitrificans PD1222 chromosome 2, complete sequence5e-1177.8BLASTN svgBLASTP svg
NC_013446:45116024511602453459922998Comamonas testosteroni CNB-2, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_001263:13786051378605140253323929Deinococcus radiodurans R1 chromosome 1, complete sequence3e-0971.9BLASTN svgBLASTP svg
NC_012856:29319952931995295427722283Ralstonia pickettii 12D chromosome 1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010617:77491477491482823353320Kocuria rhizophila DC2201, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_005139:51876051876053705318294Vibrio vulnificus YJ016 chromosome I, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_009348:2631759*2631759265138819630Aeromonas salmonicida subsp. salmonicida A449, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_011769:24720224720227380526604Desulfovibrio vulgaris str. 'Miyazaki F', complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013172:25565172556517257961323097Brachybacterium faecium DSM 4810, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014210:14403614403616380119766Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,4e-0867.9BLASTN svgBLASTP svg
NC_014323:46656104665610471710351494Herbaspirillum seropedicae SmR1 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_020302:10741201074120109337319254Corynebacterium halotolerans YIM 70093 = DSM 44683, complete4e-0867.9BLASTN svgBLASTP svg
NC_010725:2589014*2589014261596126948Methylobacterium populi BJ001, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006677:1255079*1255079128032225244Gluconobacter oxydans 621H, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_005125:34202703420270344513224863Gloeobacter violaceus PCC 7421, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013174:81515581515583511619962Jonesia denitrificans DSM 20603, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004463:18725371872537189486322327Bradyrhizobium japonicum USDA 110, complete genome3e-0661.9BLASTN svgBLASTP svg