Pre_GI: BLASTP Hits

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Query: NC_010067:191190:216595 Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete

Start: 216595, End: 216957, Length: 363

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This subspecies (IIIa) is usually found associated with reptiles, although contact with infected animals can result in the spread of the organism to humans or animals such as turkeys. This strain was originally isolated from a cornsnake in 1986 in Oregon, USA. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011751:3048490:304849030484903048927438Escherichia coli UMN026 chromosome, complete genomeTmRNA1e-1272
CU928145:2973968:297872329787232979171449Escherichia coli 55989 chromosome, complete genomeTmRNA1e-1271.6
NC_011748:2973968:297872329787232979171449Escherichia coli 55989, complete genomeTmRNA1e-1271.6
NC_011750:2928990:293278129327812933151371Escherichia coli IAI39 chromosome, complete genomeTmRNA1e-1271.6
CU928160:2818750:282254128225412822911371Escherichia coli IAI1 chromosome, complete genomeTmRNA1e-1271.6
NC_002655:3538656:354534635453463545811466Escherichia coli O157:H7 EDL933, complete genome10Sa RNA (tmRNA); tags incomplete translation products for degradation1e-0858.9
CP002185:2919752:292652629265262926887362Escherichia coli W, complete genometmRNA2e-0858.2
CP002516:1165726:117897011789701179331362Escherichia coli KO11, complete genome2e-0858.2
NC_000913:2746886:275361527536152753977363Escherichia coli K12, complete genome10Sa RNA SsrA2e-0858.2
NC_004741:2741971:274876627487662749128363Shigella flexneri 2a str. 2457T, complete genome10Sa RNA (tmRNA)2e-0858.2
NC_009800:2788164:279586927958692796231363Escherichia coli HS, complete genometmRNA2e-0858.2
NC_010473:2839902:284538028453802845742363Escherichia coli str. K-12 substr. DH10B, complete genome10Sa RNA SsrA (tmRNA)2e-0858.2
AP010958:3238742:324421732442173244579363Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-0858.2