Pre_GI: BLASTP Hits

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Query: NC_010001:649000:655666 Clostridium phytofermentans ISDg, complete genome

Start: 655666, End: 656220, Length: 555

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018866:1402259:141560314156031416181579Dehalobacter sp. DCA chromosome, complete genomeRNA polymerase sigma factor2e-1685.1
NC_010520:35845:544285442854991564Clostridium botulinum A3 str. Loch Maree, complete genomeRNA polymerase sigma-70 factor family1e-1272.4
NC_015172:1429266:144744914474491448018570Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-1271.6
NC_008435:854576:876605876605877288684Rhodopseudomonas palustris BisA53, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-1271.6
NC_012658:35500:543805438054943564Clostridium botulinum Ba4 str. 657 chromosome, complete genomeRNA polymerase factor sigma-705e-1167.4
NC_010516:42475:604246042460987564Clostridium botulinum B1 str. Okra, complete genomeRNA polymerase sigma-70 factor family5e-1167.4
NC_009495:38000:605326053261095564Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeRNA polymerase factor sigma-704e-1167.4
NC_009697:38000:603936039360956564Clostridium botulinum A str. ATCC 19397 chromosome, completeRNA polymerase factor sigma-704e-1167.4
NC_009698:38000:603946039460957564Clostridium botulinum A str. Hall chromosome, complete genomeRNA polymerase factor sigma-704e-1167.4
NC_009699:33452:554815548156044564Clostridium botulinum F str. Langeland chromosome, complete genomeRNA polymerase factor sigma-704e-1167.4
NC_017297:33519:556145561456177564Clostridium botulinum F str. 230613 chromosome, complete genomeRNA polymerase sigma-70 factor family4e-1167.4
NC_016048:3063888:309419630941963094762567Oscillibacter valericigenes Sjm18-20, complete genomeputative RNA polymerase ECF subfamily sigma factor6e-1167
NC_015977:3424178:346982134698213470381561Roseburia hominis A2-183 chromosome, complete genomeputative RNA polymerase sigma factor (ECF subfamily) protein8e-1166.6
NC_012563:36000:546405464055203564Clostridium botulinum A2 str. Kyoto, complete genomeRNA polymerase sigma-70 factor family2e-1065.5
NC_009495:1759759:176328217632821763854573Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeRNA polymerase factor sigma-704e-1064.3
NC_015977:2718437:272872027287202729280561Roseburia hominis A2-183 chromosome, complete genomeputative RNA polymerase sigma factor (ECF subfamily) protein2e-0962.4
NC_009050:604950:619640619640620254615Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily7e-0960.1
NC_016627:689406:701226701226701768543Clostridium clariflavum DSM 19732 chromosome, complete genomesigma-70 family RNA polymerase sigma factor1e-0859.3
NC_014206:2912945:291424629142462914827582Geobacillus sp. C56-T3 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit9e-0856.6
NC_013411:1587689:160318016031801603761582Geobacillus sp. Y412MC61, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-0856.6
NC_014915:727631:743122743122743703582Geobacillus sp. Y412MC52 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-0856.6
NC_016631:5378810:537881053788105379649840Granulicella mallensis MP5ACTX8 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-0756.2
NC_019897:329945:346389346389346979591Thermobacillus composti KWC4 chromosome, complete genomesigma-70 family RNA polymerase sigma factor2e-0755.8
NC_012483:1567253:158365615836561584234579Acidobacterium capsulatum ATCC 51196, complete genomeRNA polymerase sigma-70 factor, ECF subfamily2e-0755.5
NC_011916:2967624:299003329900332990593561Caulobacter crescentus NA1000 chromosome, complete genomeRNA polymerase sigma factor2e-0755.5
NC_002696:2941644:296405329640532964613561Caulobacter crescentus CB15, complete genomeRNA polymerase sigma-70 factor2e-0755.5
NC_014829:178000:186205186205186768564Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0755.1
NC_010678:642769:664204664204664836633Ralstonia pickettii 12J chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily6e-0753.9
NC_015311:720631:726166726166726678513Prevotella denticola F0289 chromosome, complete genomeSigma-70 region 28e-0753.5
NC_014923:79370:919919199192533543Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeRNA polymerase sigma factor, sigma-70 family2e-0652
NC_015160:4285542:430098843009884301557570Odoribacter splanchnicus DSM 20712 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0651.6
NC_016609:2951301:297559729755972976196600Niastella koreensis GR20-10 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-0651.6
NC_009092:1684467:170170617017061702344639Shewanella loihica PV-4, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0651.2
NC_012880:3982383:400842040084204008974555Dickeya dadantii Ech703, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-0650.1