Pre_GI: BLASTP Hits

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Query: NC_010001:4250828:4263438 Clostridium phytofermentans ISDg, complete genome

Start: 4263438, End: 4263818, Length: 381

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012778:1946924:195058319505831950966384Eubacterium eligens ATCC 27750, complete genomeGntR family transcriptional regulator / MocR family aminotransferase2e-2097.8
NC_010999:2450974:245773324577332458107375Lactobacillus casei, complete genomeRegulatory protein GntR, HTH1e-1994.7
NC_015589:3085442:309769230976923098066375Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeregulatory protein GntR6e-1889.4
NC_017219:2014605:201883520188352019284450Bifidobacterium longum subsp. infantis ATCC 15697, complete genomehypothetical protein7e-1785.9
NC_011593:2014787:201901720190172019466450Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,regulatory protein GntR7e-1785.9
NC_000853:771746:792240792240792605366Thermotoga maritima MSB8, complete genometranscriptional regulator, GntR family3e-1270.5
NC_013642:545464:565944565944566309366Thermotoga naphthophila RKU-10, complete genometranscriptional regulator, GntR family1e-1168.2
NC_009486:155651:155651155651156016366Thermotoga petrophila RKU-1 chromosome, complete genomeregulatory protein GntR1e-1168.2
NC_013204:2826500:282801928280192828498480Eggerthella lenta DSM 2243, complete genometranscriptional regulator, GntR family4e-1063.5
NC_004193:375416:546902546902547279378Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator1e-0961.6
NC_013595:41245:542395423954604366Streptosporangium roseum DSM 43021, complete genometranscriptional regulator protein-like protein1e-0961.6
NC_004193:375416:375416375416675301299886Oceanobacillus iheyensis HTE831, complete genome2e-0961.2
NC_013165:329185:374694374694375074381Slackia heliotrinireducens DSM 20476, complete genomepredicted transcriptional regulator1e-0858.5
NC_012669:96966:114794114794115174381Beutenbergia cavernae DSM 12333, complete genometranscriptional regulator, GntR family2e-0857.8
NC_015949:47414:482944829448677384Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeGntR family transcriptional regulator3e-0857.4
NC_015949:71474:862228622286587366Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeGntR family transcriptional regulator2e-0857.4
NC_008593:1917118:191914919191491919529381Clostridium novyi NT, complete genometranscriptional regulator, gntR family2e-0857.4
NC_012673:2535427:257491425749142575303390Exiguobacterium sp. AT1b, complete genometranscriptional regulator, GntR family4e-0856.6
NC_019897:329945:376575376575376955381Thermobacillus composti KWC4 chromosome, complete genometranscriptional regulator4e-0856.6
NC_016609:4209000:4209999420999942114741476Niastella koreensis GR20-10 chromosome, complete genomeDeoR family transcriptional regulator5e-0856.6
NC_014328:3482980:3506242350624235076901449Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative transcriptional regulator5e-0856.6
NC_016631:5478098:550109155010915501534444Granulicella mallensis MP5ACTX8 chromosome, complete genomeGntR family transcriptional regulator6e-0856.2
NC_009921:1611132:161877516187751619167393Frankia sp. EAN1pec, complete genometranscriptional regulator, GntR family6e-0856.2
NC_012815:1092795:109367010936701094206537Bifidobacterium animalis subsp. lactis DSM 10140, complete genomehypothetical protein9e-0855.8
NC_012814:1092860:109373510937351094271537Bifidobacterium animalis subsp. lactis Bl-04, complete genomehypothetical protein9e-0855.8
NC_017217:1092916:109379110937911094327537Bifidobacterium animalis subsp. lactis V9 chromosome, completehypothetical protein9e-0855.8
NC_008346:2579756:258415125841512584543393Syntrophomonas wolfei subsp. wolfei str. Goettingen, completetranscriptional regulator, GntR family7e-0855.8
NC_011835:1819707:182058218205821821001420Bifidobacterium animalis subsp. lactis AD011 chromosome, completeregulatory protein GntR7e-0855.8
NC_017216:1092751:109362610936261094045420Bifidobacterium animalis subsp. lactis BLC1, complete genometranscriptional regulator, gntR family protein7e-0855.8
NC_009654:91096:9749297492990691578Marinomonas sp. MWYL1, complete genomeGntR family transcriptional regulator9e-0855.5
NC_017215:1091941:109343310934331094128696Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome,GntR family transcriptional regulator1e-0755.5
NC_017214:1727676:172855117285511729246696Bifidobacterium animalis subsp. lactis BB-12 chromosome, completeGntR family transcriptional regulator1e-0755.5
NC_009848:161373:170355170355170726372Bacillus pumilus SAFR-032, complete genomeGntR family transcriptional regulator1e-0755.1
NC_016023:1538000:155278415527841553185402Bacillus coagulans 36D1 chromosome, complete genomeGntR family transcriptional regulator2e-0754.3
NC_020164:887510:906911906911907288378Staphylococcus warneri SG1, complete genomeGntR family transcriptional regulator2e-0754.3
NC_002976:1540794:154170815417081542085378Staphylococcus epidermidis RP62A, complete genometranscriptional regulator, GntR family3e-0753.9
NC_017219:2014605:202231920223192022693375Bifidobacterium longum subsp. infantis ATCC 15697, complete genometranscriptional regulator5e-0753.1
NC_011593:2014787:202250120225012022875375Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,regulatory protein GntR5e-0753.1
NC_014393:92500:928219282193204384Clostridium cellulovorans 743B chromosome, complete genometranscriptional regulator, GntR family6e-0752.8
NC_009921:5531972:553435055343505534697348Frankia sp. EAN1pec, complete genometranscriptional regulator, GntR family9e-0752.4
NC_013174:601434:618920618920619279360Jonesia denitrificans DSM 20603, complete genometranscriptional regulator, GntR family8e-0752.4
NC_009725:2859630:286726728672672867659393Bacillus amyloliquefaciens FZB42, complete genomeYtrA1e-0652
NC_015425:2144639:214552921455292145924396Clostridium botulinum BKT015925 chromosome, complete genomeGntR family transcriptional regulator1e-0652
NC_021184:504728:5106275106275121441518Desulfotomaculum gibsoniae DSM 7213, complete genometranscriptional regulator with HTH domain and aminotransferase domain1e-0652
NC_003155:4592000:462092046209204621708789Streptomyces avermitilis MA-4680, complete genomeregulatory protein KorSA, GntR-family transcriptional regulator1e-0652
NC_003155:4906639:491297149129714913759789Streptomyces avermitilis MA-4680, complete genomeregulatory protein KorSA, GntR-family transcriptional regulator1e-0651.6
NC_010001:2836995:285926328592632859625363Clostridium phytofermentans ISDg, complete genometranscriptional regulator, GntR family2e-0651.6
NC_014363:114239:129522129522129881360Olsenella uli DSM 7084 chromosome, complete genometranscriptional regulator, GntR family2e-0651.2
NC_014328:4387303:442000144200014420978978Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative regulatory protein2e-0651.2
NC_016109:5455060:547507154750715475418348Kitasatospora setae KM-6054, complete genomeGntR family transcriptional regulator2e-0651.2
NC_008262:419726:4197264197264212851560Clostridium perfringens SM101, complete genometranscriptional regulator, GntR family/aminotransferase3e-0650.8
NC_008593:2457594:247967724796772480045369Clostridium novyi NT, complete genometranscriptional regulator, GntR family3e-0650.8
NC_020133:4889034:490252549025254902890366Mycobacterium liflandii 128FXT, complete genometranscriptional regulatory protein3e-0650.4
NC_018524:1279156:1301474130147413030301557Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomebacterial regulatory s, gntR family protein3e-0650.4
NC_014833:1045180:106518010651801065554375Ruminococcus albus 7 chromosome, complete genomeGntR family transcriptional regulator3e-0650.4
NC_014118:1559770:1566130156613015676531524Burkholderia sp. CCGE1002 chromosome chromosome 2, completetranscriptional regulator, GntR family with aminotransferase domain4e-0650.4
NC_012781:2148478:215126721512672151716450Eubacterium rectale ATCC 33656, complete genometranscriptional regulator, GntR family4e-0650.1
NC_006526:1976779:1999286199928620006591374Zymomonas mobilis subsp. mobilis ZM4, complete genometranscriptional regulatory protein6e-0649.7
NC_013929:5248000:526121052612105261998789Streptomyces scabiei 87.22 chromosome, complete genometranscriptional regulator5e-0649.7
NC_015425:2690448:271266827126682713036369Clostridium botulinum BKT015925 chromosome, complete genomeGntR family transcriptional regulator5e-0649.7
NC_015656:1469501:148617614861761486967792Frankia symbiont of Datisca glomerata chromosome, complete genomeGntR family transcriptional regulator with UTRA sensor domain7e-0649.3
NC_008261:2524913:253311325331132533469357Clostridium perfringens ATCC 13124, complete genometranscriptional regulator, GntR family8e-0649.3
NC_018515:1406816:142889914288991429282384Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator8e-0648.9
NC_008261:421000:4252114252114267731563Clostridium perfringens ATCC 13124, complete genometranscriptional regulator, GntR family/aminotransferase1e-0548.9
NC_012034:1049454:106628310662831066645363Anaerocellum thermophilum DSM 6725, complete genometranscriptional regulator, GntR family1e-0548.9