Pre_GI: BLASTP Hits

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Query: NC_010001:3421710:3441936 Clostridium phytofermentans ISDg, complete genome

Start: 3441936, End: 3442688, Length: 753

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014376:317312:336200336200336973774Clostridium saccharolyticum WM1 chromosome, complete genomepyruvate formate-lyase activating enzyme2e-83308
NC_006448:1451729:145231514523151453115801Streptococcus thermophilus LMG 18311, complete genomepyruvate-formate lyase activating enzyme7e-67253
NC_009801:995396:9998659998651000662798Escherichia coli E24377A, complete genomepyruvate formate-lyase 1-activating enzyme2e-63242
NC_004347:3028000:304450830445083045248741Shewanella oneidensis MR-1, complete genomepyruvate formate-lyase 1 activating enzyme3e-63241
NC_011094:1050700:106119810611981061995798Salmonella enterica subsp. enterica serovar Schwarzengrund strpyruvate formate lyase-activating enzyme 11e-62239
NC_013410:1285857:129149512914951292271777Fibrobacter succinogenes subsp. succinogenes S85 chromosome,pyruvate formate-lyase activating enzyme1e-62239
NC_015061:1598920:160241216024121603209798Rahnella sp. Y9602 chromosome, complete genomepyruvate formate-lyase activating enzyme6e-62237
NC_016818:1605918:160938716093871610184798Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completepyruvate formate-lyase activating enzyme6e-62237
NC_017047:1551836:155532815553281556068741Rahnella aquatilis HX2 chromosome, complete genomepyruvate formate lyase-activating enzyme 11e-61236
NC_010159:1668795:167164316716431672377735Yersinia pestis Angola, complete genomepyruvate formate-lyase 1-activating enzyme3e-61235
NC_019970:35985:607916079161519729Thermoanaerobacterium thermosaccharolyticum M0795, complete genomepyruvate formate-lyase 1-activating enzyme2e-61235
NC_014410:51711:749047490475632729Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,pyruvate formate-lyase activating enzyme2e-61235
NC_007712:1601499:162391816239181624658741Sodalis glossinidius str. 'morsitans', complete genomepyruvate formate-lyase 1 activating enzyme1e-60233
NC_016605:233087:236623236623237444822Pediococcus claussenii ATCC BAA-344 chromosome, complete genomepyruvate formate-lyase activating enzyme2e-60232
NC_015555:49842:739707397074698729Thermoanaerobacterium xylanolyticum LX-11 chromosome, completepyruvate formate-lyase activating enzyme2e-59228
NC_009831:2045811:204581120458112046551741Shewanella sediminis HAW-EB3, complete genome(Formate-C-acetyltransferase)-activating enzyme5e-59227
NC_015275:1223088:124302112430211243746726Clostridium lentocellum DSM 5427 chromosome, complete genomepyruvate formate-lyase activating enzyme1e-55216
NC_015460:418826:434556434556435296741Gallibacterium anatis UMN179 chromosome, complete genomepyruvate formate lyase-activating enzyme 12e-53209
NC_004461:205068:205068205068205823756Staphylococcus epidermidis ATCC 12228, complete genomeformate acetyltransferase activating enzyme2e-53209
NC_014933:2240000:224205322420532242778726Bacteroides helcogenes P 36-108 chromosome, complete genomepyruvate formate-lyase activating enzyme4e-53207
NC_015709:1769806:179812517981251798919795Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome, completepyruvate formate-lyase activating enzyme1e-50199
NC_014614:2500301:252580225258022526560759Clostridium sticklandii, complete genomepyruvate formate lyase activating enzyme 13e-50198
NC_017343:224777:227049227049227804756Staphylococcus aureus subsp. aureus ECT-R 2, complete genomepyruvate formate-lyase activating enzyme6e-50197
NC_013093:2633000:267457826745782675423846Actinosynnema mirum DSM 43827, complete genomepyruvate formate-lyase activating enzyme1e-48192
NC_018750:3315309:332659433265943327406813Streptomyces venezuelae ATCC 10712, complete genomePyruvate formate-lyase activating enzyme2e-47189
NC_008618:1206157:122747812274781228356879Bifidobacterium adolescentis ATCC 15703, complete genomepyruvate formate-lyase 1 activating enzyme6e-42171
NC_013714:1521404:154305415430541543935882Bifidobacterium dentium Bd1, complete genomepflA1 Pyruvate formate-lyase activating enzyme2e-41169
NC_010001:1488000:149196114919611492752792Clostridium phytofermentans ISDg, complete genomeglycyl-radical enzyme activating protein family1e-31136
NC_016627:1960097:197152619715261972368843Clostridium clariflavum DSM 19732 chromosome, complete genomeglycine radical enzyme activase, YjjW family4e-29128
NC_016938:193000:211219211219211995777Melissococcus plutonius DAT561 chromosome 1, complete genomepyruvate formate-lyase activating enzyme5e-29128
NC_008563:4707826:472980647298064730723918Escherichia coli APEC O1, complete genomeputative pyruvate-formate lyase-activating enzyme1e-28126
NC_012470:2021316:202131620213162022089774Streptococcus equi subsp. zooepidemicus, complete genomepyruvate formate-lyase activating enzyme2e-27122
NC_009454:2502724:253056025305602531471912Pelotomaculum thermopropionicum SI, complete genomepyruvate-formate lyase-activating enzyme5e-27121
NC_013517:2055071:205983920598392060660822Sebaldella termitidis ATCC 33386, complete genomeglycyl-radical enzyme activating protein family3e-26119
NC_009012:1901492:190757919075791908421843Clostridium thermocellum ATCC 27405, complete genomeRadical SAM3e-26118
NC_021184:657093:657093657093658031939Desulfotomaculum gibsoniae DSM 7213, complete genomeglycyl-radical enzyme activator family protein1e-24113
NC_021182:4058873:406569240656924066615924Clostridium pasteurianum BC1, complete genomeglycyl-radical enzyme activator family protein3e-24112
NC_014328:2872721:287420728742072875118912Clostridium ljungdahlii ATCC 49587 chromosome, complete genomepyruvate formate-lyase activating enzyme8e-24110
NC_021182:4058873:406031340603134061218906Clostridium pasteurianum BC1, complete genomeglycyl-radical enzyme activator family protein1e-23110
NC_009922:2556033:257209025720902573040951Alkaliphilus oremlandii OhILAs, complete genomeglycyl-radical enzyme activating protein family1e-23110
NC_020063:3690308:371903437190343720008975Enterobacteriaceae bacterium strain FGI 57, complete genomeglycyl-radical enzyme activator family protein1e-22106
NC_009438:212476:226933226933227853921Shewanella putrefaciens CN-32 chromosome, complete genomeglycyl-radical activating family protein2e-21102
NC_008750:450233:464493464493465413921Shewanella sp. W3-18-1, complete genomeglycyl-radical enzyme activating protein family2e-21102
NC_012108:481657:495044495044495952909Desulfobacterium autotrophicum HRM2, complete genomePflC15e-21101
NC_014364:4488875:450773445077344508657924Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeglycyl-radical enzyme activating protein family8e-21100
NC_009633:3933941:394874939487493949696948Alkaliphilus metalliredigens QYMF chromosome, complete genomeglycyl-radical activating family protein5e-2098.2
NC_009698:2171151:218321821832182184171954Clostridium botulinum A str. Hall chromosome, complete genomeglycyl-radical enzyme activating family protein1e-1997.1
NC_009697:2173000:218299921829992183952954Clostridium botulinum A str. ATCC 19397 chromosome, completeglycyl-radical enzyme activating family protein1e-1997.1
NC_009495:2244774:225435722543572255319963Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeglycyl-radical activating family protein1e-1996.7
NC_012563:2384500:239776123977612398714954Clostridium botulinum A2 str. Kyoto, complete genomeglycyl-radical enzyme activating family protein2e-1995.9
NC_009699:2287893:230355823035582304511954Clostridium botulinum F str. Langeland chromosome, complete genomeglycyl-radical enzyme activating family protein2e-1995.9
NC_021182:966839:969602969602970534933Clostridium pasteurianum BC1, complete genomeglycyl-radical enzyme activator family protein3e-1995.9
NC_010674:1496500:150598315059831506936954Clostridium botulinum B str. Eklund 17B, complete genomebenzylsuccinate synthase activating enzyme4e-1995.1
NC_014328:4316008:432998643299864330936951Clostridium ljungdahlii ATCC 49587 chromosome, complete genomepyruvate formate-lyase activating enzyme4e-1995.1
NC_012658:2295536:231172723117272312680954Clostridium botulinum Ba4 str. 657 chromosome, complete genomeglycyl-radical enzyme activating family protein4e-1995.1
NC_010723:1465097:147619614761961477149954Clostridium botulinum E3 str. Alaska E43, complete genomeglycyl-radical enzyme activating family protein6e-1994.4
NC_021184:657093:670474670474671469996Desulfotomaculum gibsoniae DSM 7213, complete genomeglycyl-radical enzyme activator family protein8e-1994
NC_013716:5141269:516390851639085164771864Citrobacter rodentium ICC168, complete genomeradical SAM superfamily protein4e-1891.7
NC_014624:2297000:230867423086742309594921Eubacterium limosum KIST612 chromosome, complete genomeputative pyruvate-formate lyase-activating enzyme1e-1790.1
NC_010001:1745089:175808817580881759035948Clostridium phytofermentans ISDg, complete genomeglycyl-radical enzyme activating protein family2e-1789.7
NC_004603:1464000:146656414665641467445882Vibrio parahaemolyticus RIMD 2210633 chromosome I, completepyruvate formate lyase activating enzyme2e-1789.4
NC_016584:5625975:563927856392785640246969Desulfosporosinus orientis DSM 765 chromosome, complete genomeglycyl-radical enzyme activator family protein3e-1789
NC_015578:423000:423018423018423869852Treponema primitia ZAS-2 chromosome, complete genomeradical SAM7e-1787.4
NC_004557:1553000:156226215622621563224963Clostridium tetani E88, complete genomebenzylsuccinate synthase activating enzyme9e-1787.4
NC_014618:4010689:404083540408354041698864Enterobacter cloacae SCF1 chromosome, complete genomeradical SAM protein2e-1685.9
NC_002937:2933000:293303029330302933953924Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completepyruvate formate-lyase 1 activating enzyme, putative3e-1685.9
NC_008751:607209:624617624617625540924Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeglycyl-radical enzyme activating protein family3e-1685.5
NC_016048:3856665:387205538720553872969915Oscillibacter valericigenes Sjm18-20, complete genomeglycyl-radical enzyme activating family protein4e-1685.1
NC_009615:919495:924724924724925629906Parabacteroides distasonis ATCC 8503 chromosome, complete genomepyruvate-formate lyase-activating enzyme7e-1684.3
NC_015577:3621777:364344236434423644344903Treponema azotonutricium ZAS-9 chromosome, complete genomepyruvate formate-lyase-activating enzyme7e-1684.3
NC_015573:2463123:250043325004332501374942Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeglycyl-radical enzyme activating protein family1e-1583.6
NC_015424:2917817:293754229375422938438897Aeromonas veronii B565 chromosome, complete genomepyruvate formate-lyase 2-activating enzyme2e-1583.2
NC_013316:120759:142198142198142737540Clostridium difficile R20291, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein3e-1582.4
NC_009089:117980:140393140393140932540Clostridium difficile 630, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein3e-1582.4
NC_009089:1283000:131846813184681319370903Clostridium difficile 630, complete genomeglycerol dehydratase activator5e-1581.6
NC_014393:1421122:142540714254071426303897Clostridium cellulovorans 743B chromosome, complete genomeRadical SAM domain-containing protein1e-1480.1
NC_014828:2657623:267336426733642673885522Ethanoligenens harbinense YUAN-3 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein2e-1479.3
AP010958:922937:947234947234948133900Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted pyruvate formate lyase activating enzyme5e-1478.2
NC_013353:922937:947234947234948133900Escherichia coli O103:H2 str. 12009, complete genomepyruvate formate lyase activating enzyme5e-1478.2
NC_013364:928486:951505951505952404900Escherichia coli O111:H- str. 11128, complete genomeputative pyruvate formate lyase activating enzyme5e-1478.2
NC_006270:3627974:364934736493473649859513Bacillus licheniformis ATCC 14580, complete genomeiron-binding, putative oxidoreductase2e-1376.3
NC_014363:114239:141718141718142665948Olsenella uli DSM 7084 chromosome, complete genomeglycyl-radical enzyme activating protein family2e-1376.3
NC_009515:616432:632876632876633580705Methanobrevibacter smithii ATCC 35061, complete genomepyruvate formate-lyase activating enzyme, PflA3e-1375.5
NC_006322:3628143:364951636495163650028513Bacillus licheniformis ATCC 14580, complete genomehypothetical protein8e-1373.9
NC_015500:311845:324489324489325265777Treponema brennaborense DSM 12168 chromosome, complete genome(Formate-C-acetyltransferase)-activating enzyme9e-1373.9
NC_009635:518000:537434537434538171738Methanococcus aeolicus Nankai-3 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein2e-1273.2
NC_009699:1122000:112656011265601127153594Clostridium botulinum F str. Langeland chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein4e-1272
NC_014484:762710:765636765636766358723Spirochaeta thermophila DSM 6192 chromosome, complete genomehypothetical protein8e-1270.9
NC_012658:1052957:106572210657221066315594Clostridium botulinum Ba4 str. 657 chromosome, complete genomeputative anaerobic ribonucleoside-triphosphate reductase activating protein8e-1270.9
NC_005945:3359598:337082333708233371122300Bacillus anthracis str. Sterne, complete genomeadical activating3e-1168.9
NC_016023:1923170:192802619280261928502477Bacillus coagulans 36D1 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein6e-1167.8
NC_014220:837926:847150847150847641492Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein7e-1167.8
NC_014614:1090000:109602810960281096540513Clostridium sticklandii, complete genomeanaerobic ribonucleotide reductase activating protein1e-1067
NC_019757:3010262:302396830239683024591624Cylindrospermum stagnale PCC 7417, complete genomeorganic radical activating enzyme1e-1067
NC_021171:608315:628611628611629099489Bacillus sp. 1NLA3E, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein3e-1065.9
NC_020291:79502:941829418294691510Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein NrdG4e-1065.1
NC_013851:2610847:261480426148042615541738Allochromatium vinosum DSM 180 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein6e-1064.7
NC_021175:1973880:199462519946251995224600Streptococcus oligofermentans AS 1.3089, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein8e-1064.3
NC_015320:273979:281574281574282272699Archaeoglobus veneficus SNP6 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein1e-0963.9
NC_015574:391869:397742397742398455714Methanobacterium sp. SWAN-1 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein1e-0963.5
NC_012673:77610:887168871689174459Exiguobacterium sp. AT1b, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein2e-0962.8
NC_008701:195850:211332211332212051720Pyrobaculum islandicum DSM 4184, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein3e-0962
NC_010729:1179008:1190495119049511915741080Porphyromonas gingivalis ATCC 33277, complete genomehypothetical protein8e-0960.8
NC_015942:3185193:320367432036743204399726Acidithiobacillus ferrivorans SS3 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein8e-0960.8
NC_014961:1071424:109188810918881092634747Desulfurococcus mucosus DSM 2162 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein8e-0960.8
NC_014960:1835697:184783718478371848409573Anaerolinea thermophila UNI-1, complete genomehypothetical protein1e-0860.5
NC_014829:4511738:451786345178634518372510Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein1e-0860.5
NC_008095:3371673:339190633919063392514609Myxococcus xanthus DK 1622, complete genomeputative radical SAM domain protein1e-0860.1
NC_018866:1706000:172228217222821722953672Dehalobacter sp. DCA chromosome, complete genomeRibonucleotide reductase of class III (anaerobic), activating protein2e-0859.3
NC_012926:2047303:206981220698122070369558Streptococcus suis BM407 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein1e-0757
NC_012924:1997052:201948520194852020042558Streptococcus suis SC84, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein1e-0757
NC_009443:1996812:201924120192412019798558Streptococcus suis 98HAH33, complete genomeorganic radical activating protein1e-0757
NC_004578:4465247:447726444772644477911648Pseudomonas syringae pv. tomato str. DC3000, complete genomeradical SAM domain protein2e-0756.6
NC_014328:180482:182633182633183142510Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative anaerobic ribonucleoside-triphosphate reductase activating protein2e-0756.6
NC_011766:1035858:105439810543981055150753Desulfurococcus kamchatkensis 1221n chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein2e-0756.2
NC_009656:2512733:254731225473122547950639Pseudomonas aeruginosa PA7 chromosome, complete genomeputative radical activating enzyme2e-0756.2
NC_014960:2141345:214753721475372148160624Anaerolinea thermophila UNI-1, complete genomehypothetical protein3e-0755.8
NC_014160:869873:873395873395874156762Thermosphaera aggregans DSM 11486 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein3e-0755.8
NC_012034:390273:413363413363414211849Anaerocellum thermophilum DSM 6725, complete genomeRadical SAM domain protein3e-0755.5
NC_013530:149281:181756181756182454699Xylanimonas cellulosilytica DSM 15894, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein5e-0755.1
NC_004663:2509433:251430925143092514803495Bacteroides thetaiotaomicron VPI-5482, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein5e-0755.1
NC_014033:164670:170194170194170454261Prevotella ruminicola 23 chromosome, complete genomelyase domain-containing protein6e-0754.7
NC_017217:1499832:152692915269291527678750Bifidobacterium animalis subsp. lactis V9 chromosome, completeanaerobic ribonucleoside-triphosphate reductase activating protein9e-0753.9
NC_010729:1549744:154974415497441550247504Porphyromonas gingivalis ATCC 33277, complete genomeputative anaerobic ribonucleoside-triphosphate reductase activating protein1e-0653.9
NC_015571:1265121:126734712673471267838492Porphyromonas gingivalis TDC60, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein1e-0653.9
NC_002950:1334500:133506413350641335555492Porphyromonas gingivalis W83, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein1e-0653.9
NC_012814:1494331:152164215216421522391750Bifidobacterium animalis subsp. lactis Bl-04, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein9e-0753.9
NC_012815:1494263:152136015213601522109750Bifidobacterium animalis subsp. lactis DSM 10140, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein9e-0753.9
NC_011835:625472:652571652571653320750Bifidobacterium animalis subsp. lactis AD011 chromosome, completeanaerobic ribonucleoside-triphosphate reductase activating protein9e-0753.9
NC_017214:191791:218888218888219637750Bifidobacterium animalis subsp. lactis BB-12 chromosome, completeAnaerobic ribonucleoside-triphosphate reductase activating protein9e-0753.9
NC_017215:1499179:152627615262761527025750Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome,[Formate-C-acetyltransferase]-activating enzyme9e-0753.9
NC_017216:1494190:152128715212871522036750Bifidobacterium animalis subsp. lactis BLC1, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein9e-0753.9
NC_015697:321311:322213322213322791579Lactobacillus reuteri SD2112 chromosome, complete genomepyruvate formate-lyase activating enzyme1e-0653.5
NC_015425:198315:200437200437200931495Clostridium botulinum BKT015925 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein2e-0653.1
NC_014633:837588:882099882099882599501Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceribonucleoside-triphosphate reductase class III activase subunit2e-0652.8
NC_015703:234960:250733250733251335603Runella slithyformis DSM 19594 chromosome, complete genomeRadical SAM domain-containing protein2e-0652.8
NC_007181:1364522:136623613662361366871636Sulfolobus acidocaldarius DSM 639, complete genomehypothetical protein4e-0652
NC_016814:18000:3078730787322021416Sinorhizobium fredii HH103 plasmid pSfHH103c complete sequenceK04069 pyruvate formate lyase activating enzyme7e-0651.2