Pre_GI: BLASTP Hits

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Query: NC_010001:3266561:3276291 Clostridium phytofermentans ISDg, complete genome

Start: 3276291, End: 3276776, Length: 486

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012778:841934:852522852522853013492Eubacterium eligens ATCC 27750, complete genomechemotaxis protein CheD2e-59228
NC_008346:983816:996088996088996573486Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeCheD, stimulates methylation of MCP proteins3e-42171
NC_014377:1089894:109874010987401099225486Thermosediminibacter oceani DSM 16646 chromosome, complete genomeCheD2e-39161
NC_010516:2900057:292037129203712920859489Clostridium botulinum B1 str. Okra, complete genomechemotaxis protein CheD9e-37152
NC_010520:2937981:296072729607272961215489Clostridium botulinum A3 str. Loch Maree, complete genomechemotaxis protein CheD9e-37152
NC_012563:3090954:311531431153143115802489Clostridium botulinum A2 str. Kyoto, complete genomechemotaxis protein CheD9e-37152
NC_009495:2876865:290122529012252901713489Clostridium botulinum A str. ATCC 3502 chromosome, complete genomechemoreceptor glutamine deamidase CheD9e-37152
NC_009697:2790277:281463728146372815125489Clostridium botulinum A str. ATCC 19397 chromosome, completechemoreceptor glutamine deamidase CheD9e-37152
NC_009698:2727203:275156327515632752051489Clostridium botulinum A str. Hall chromosome, complete genomechemoreceptor glutamine deamidase CheD9e-37152
NC_009699:2901497:292490429249042925392489Clostridium botulinum F str. Langeland chromosome, complete genomechemoreceptor glutamine deamidase CheD9e-37152
NC_012658:2930244:295279929527992953287489Clostridium botulinum Ba4 str. 657 chromosome, complete genomechemoreceptor glutamine deamidase CheD9e-37152
NC_017297:2905138:292504129250412925529489Clostridium botulinum F str. 230613 chromosome, complete genomechemotaxis protein CheD9e-37152
NC_014328:1046958:105146610514661051954489Clostridium ljungdahlii ATCC 49587 chromosome, complete genomechemotaxis protein3e-35147
NC_020291:4944835:500166550016655002153489Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeputative chemoreceptor glutamine deamidase CheD1e-34145
NC_008593:1060548:107352910735291074017489Clostridium novyi NT, complete genomechemotaxis protein CheD2e-34144
NC_009617:4946000:496383149638314964319489Clostridium beijerinckii NCIMB 8052 chromosome, complete genomechemoreceptor glutamine deamidase CheD3e-32137
NC_021182:2921000:294471129447112945202492Clostridium pasteurianum BC1, complete genomechemotaxis protein2e-32137
NC_017095:166896:191016191016191495480Fervidobacterium pennivorans DSM 9078 chromosome, complete genomechemotaxis protein2e-30131
NC_003901:1568000:157669115766911577170480Methanosarcina mazei Go1, complete genomechemoreceptor glutamine deamidase CheD2e-30131
NC_020389:1346358:135174813517481352227480Methanosarcina mazei Tuc01, complete genomeChemotaxis protein CheD2e-30131
NC_015707:705628:706233706233706715483Thermotoga thermarum DSM 5069 chromosome, complete genomeCheD6e-30129
NC_000868:1502276:150970415097041510195492Pyrococcus abyssi GE5, complete genomechemotaxis protein ched3e-29127
NC_015474:1035834:104675510467551047246492Pyrococcus sp. NA2 chromosome, complete genomechemoreceptor glutamine deamidase CheD7e-29126
NC_021184:2238500:224845222484522248952501Desulfotomaculum gibsoniae DSM 7213, complete genomechemotaxis protein6e-29126
NC_015391:2099472:210685221068522107334483Carnobacterium sp. 17-4 chromosome, complete genomesequence specific deamidase required for methylation of methyl-accepting chemotaxis proteins (MCPs) by CheR3e-28124
NC_000961:435489:444354444354444842489Pyrococcus horikoshii OT3, complete genomehypothetical protein4e-27120
NC_013741:1144592:116913511691351169605471Archaeoglobus profundus DSM 5631, complete genomeCheD, stimulates methylation of MCP protein4e-26117
NC_013849:933913:940008940008940478471Ferroglobus placidus DSM 10642 chromosome, complete genomeCheD2e-25114
NC_000917:940088:945172945172945645474Archaeoglobus fulgidus DSM 4304, complete genomehypothetical protein3e-25114
NC_011653:1728000:174570517457051746187483Thermosipho africanus TCF52B, complete genomechemoreceptor glutamine deamidase CheD8e-25112
NC_015636:1455700:146394414639441464405462Methanothermococcus okinawensis IH1 chromosome, complete genomeCheD1e-23108
NC_012108:3878500:390060539006053901084480Desulfobacterium autotrophicum HRM2, complete genomeCheD19e-2199.4
NC_011832:1949717:196852919685291969023495Candidatus Methanosphaerula palustris E1-9c, complete genomeCheD1e-2098.6
NC_019892:376000:395885395885396340456Singulisphaera acidiphila DSM 18658 chromosome, complete genomechemotaxis protein6e-1786.7
NC_004460:1237129:125917712591771259821645Vibrio vulnificus CMCP6 chromosome II, complete sequenceChemotaxis protein4e-1477.4
NC_005140:1820970:184349318434931844137645Vibrio vulnificus YJ016 chromosome II, complete sequencechemotaxis protein4e-1477
NC_017243:1698000:171175617117561712349594Brachyspira intermedia PWS/A chromosome, complete genomechemotaxis protein CheD4e-1373.9
NC_012225:569590:583560583560584153594Brachyspira hyodysenteriae WA1, complete genomechemotaxis protein CheD4e-1373.9
NC_018607:921923:950130950130950723594Brachyspira pilosicoli B2904 chromosome, complete genomechemotaxis protein CheD5e-1373.6
NC_014330:505412:514323514323514916594Brachyspira pilosicoli 95/1000 chromosome, complete genomechemotaxis protein CheD5e-1373.6
NC_018604:1943561:194814019481401948733594Brachyspira pilosicoli WesB complete genomechemotaxis protein CheD5e-1373.6
NC_019908:121178:149850149850150443594Brachyspira pilosicoli P43/6/78 chromosome, complete genomechemotaxis protein CheD5e-1373.6
NC_007298:778723:803115803115803720606Dechloromonas aromatica RCB, complete genomeCheD8e-1372.8
NC_015497:2997275:301504130150413015661621Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeCheD3e-1270.9
NC_014166:1751906:176804217680421768719678Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeCheD protein3e-1167.8
NC_012968:1352463:135673813567381357346609Methylotenera mobilis JLW8, complete genomeCheD, stimulates methylation of MCP protein3e-1167.4
NC_015222:1607757:161330516133051613916612Nitrosomonas sp. AL212 chromosome, complete genomeCheD7e-1166.2
NC_014831:2224733:224494822449482245556609Thermaerobacter marianensis DSM 12885 chromosome, complete genomeCheD1e-1065.5
NC_015172:1161000:116873911687391169203465Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeCheD2e-1065.1
NC_008710:621822:638079638079638570492Borrelia turicatae 91E135, complete genomechemotaxis protein CheD2e-1064.7
NC_014323:4792048:483467548346754835286612Herbaspirillum seropedicae SmR1 chromosome, complete genomechemoreceptor glutamine deamidase2e-0961.2
NC_009049:1125681:113783011378301138429600Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequenceCheD, stimulates methylation of MCP proteins2e-0961.2
NC_012660:5571500:559194555919455592478534Pseudomonas fluorescens SBW25 chromosome, complete genomechemoreceptor glutamine deamidase CheD4e-0960.5
NC_016830:2642881:266974526697452670242498Pseudomonas fluorescens F113 chromosome, complete genomeprotein CheD26e-0960.1
NC_009428:1827352:183982518398251840424600Rhodobacter sphaeroides ATCC 17025 chromosome, complete genomechemoreceptor glutamine deamidase CheD1e-0858.9
NC_015138:3927411:392949639294963929978483Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeCheD1e-0858.9
NC_008570:1094442:111124211112421111712471Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeputative chemotaxis protein CheD2e-0858.2
NC_008752:3902637:391887139188713919326456Acidovorax avenae subsp. citrulli AAC00-1, complete genome1e-0755.8
NC_013173:1609123:161501116150111615547537Desulfomicrobium baculatum DSM 4028, complete genomeCheD, stimulates methylation of MCP proteins8e-0753.1
NC_015672:788417:797408797408797995588Flexistipes sinusarabici DSM 4947 chromosome, complete genomeCheD3e-0651.2