Pre_GI: BLASTP Hits

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Query: NC_010001:2125500:2128734 Clostridium phytofermentans ISDg, complete genome

Start: 2128734, End: 2131175, Length: 2442

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019903:2708500:2723797272379727262442448Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,ATP-dependent DNA ligase LigD phosphoesterase module01161
NC_007722:851129:8511298511298536482520Erythrobacter litoralis HTCC2594, complete genomehypothetical protein1e-172607
NC_009668:1726000:1741498174149817440022505Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceDNA ligase D2e-158560
NC_011071:10842:3104831048335252478Stenotrophomonas maltophilia R551-3, complete genomeDNA ligase D2e-154546
NC_008782:2683989:2685104268510426876172514Acidovorax sp. JS42, complete genomeDNA ligase (ATP)1e-151537
NC_007508:2941889:2945662294566229482802619Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeATP-dependent DNA ligase1e-140500
NC_015136:2021799:2024715202471520266731959Burkholderia sp. CCGE1001 chromosome 1, complete sequenceDNA ligase D1e-107391
NC_015138:3022414:3039612303961230424222811Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeDNA ligase D2e-104380
NC_013169:2045000:2062906206290620655422637Kytococcus sedentarius DSM 20547, complete genomeDNA ligase D/DNA polymerase LigD4e-55216
NC_019673:4687289:4694814469481446962921479Saccharothrix espanaensis DSM 44229 complete genomeputative DNA ligase5e-54213
NC_017249:4398000:439968343996834400603921Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-42175
NC_009485:8138314:8168179816817981692341056Bradyrhizobium sp. BTAi1 chromosome, complete genomeATP-dependent DNA ligase6e-42173
NC_009485:8138314:816722581672258168178954Bradyrhizobium sp. BTAi1 chromosome, complete genomeDNA ligase-like protein3e-40167
NC_015573:997629:101297310129731013908936Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeDNA polymerase LigD, polymerase domain-containing protein4e-36153
NC_005244:37546:532135321354172960Pseudomonas sp. ND6 plasmid pND6-1, complete sequenceATP-dependent DNA ligase6e-33143
NC_007644:2146622:215945821594582160396939Moorella thermoacetica ATCC 39073, complete genomehypothetical protein3e-31137
NC_015565:1647554:164872216487221649630909Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeDNA polymerase LigD, polymerase domain-containing protein6e-31136
NC_017955:3670670:3674985367498536760521068Modestobacter marinus, complete genomeDNA polymerase LigD3e-30134
NC_011899:355638:355638355638356495858Halothermothrix orenii H 168, complete genomeATP dependent DNA ligase5e-30133
NC_008536:8541267:855228485522848553252969Solibacter usitatus Ellin6076, complete genomeATP dependent DNA ligase1e-29132
NC_015587:558180:570236570236570676441Hydrogenobaculum sp. SHO chromosome, complete genomeDNA ligase D, 3'-phosphoesterase domain protein2e-29131
NC_020411:558153:570209570209570649441Hydrogenobaculum sp. HO, complete genomeDNA ligase D, 3'-phosphoesterase domain protein2e-29131
NC_015557:558127:570183570183570623441Hydrogenobaculum sp. 3684 chromosome, complete genomeDNA ligase D, 3'-phosphoesterase domain protein2e-29131
NC_011126:555483:581313581313581753441Hydrogenobaculum sp. Y04AAS1, complete genomeDNA ligase D, 3'-phosphoesterase domain protein2e-29131
NC_011296:530408:531258531258531674417Thermodesulfovibrio yellowstonii DSM 11347, complete genomeDNA ligase D, 3'-phosphoesterase domain1e-28129
NC_014923:3930669:394222939422293943092864Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeATP dependent DNA ligase2e-28128
NC_004463:5722468:573615357361535736785633Bradyrhizobium japonicum USDA 110, complete genomesimilar to DNA ligase1e-27125
NC_019673:4687289:4696135469613546971631029Saccharothrix espanaensis DSM 44229 complete genomeputative DNA polymerase, LigD family2e-27124
NC_009380:4184695:4201321420132142023401020Salinispora tropica CNB-440 chromosome, complete genomeDNA primase, small subunit5e-27123
NC_015675:4442000:446120844612084462071864Mesorhizobium opportunistum WSM2075 chromosome, complete genomeATP dependent DNA ligase1e-26122
NC_014811:166389:185636185636186622987Mycobacterium sp. Spyr1 plasmid pMSPYR101, complete sequenceDNA polymerase LigD-like ligase domain-containing protein4e-25117
NC_003155:3652587:369489236948923695773882Streptomyces avermitilis MA-4680, complete genomeDNA ligase1e-24115
NC_010794:2157920:217770221777022178103402Methylacidiphilum infernorum V4, complete genomeATP-dependent DNA ligase3e-24114
NC_015320:160792:174810174810175175366Archaeoglobus veneficus SNP6 chromosome, complete genomeDNA ligase D, 3'-phosphoesterase domain-containing protein5e-24113
NC_015416:2723189:274416427441642745111948Methanosaeta concilii GP-6 chromosome, complete genomeDNA polymerase LigD7e-24113
NC_013235:593289:6138866138866148931008Nakamurella multipartita DSM 44233, complete genomeDNA primase small subunit1e-23112
NC_000964:2146000:219156621915662192378813Bacillus subtilis subsp. subtilis str. 168, complete genomeDNA ligase2e-23112
NC_014923:4017575:402602940260294026889861Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeATP dependent DNA ligase2e-23111
NC_017188:1172181:127192112719211272733813Bacillus amyloliquefaciens TA208 chromosome, complete genomeATP-dependent DNA ligase9e-23109
NC_017190:2130651:218728421872842188096813Bacillus amyloliquefaciens LL3 chromosome, complete genomeSPBc2 prophage-derived DNA ligase-like protein ligB9e-23109
NC_017191:1173989:127349812734981274310813Bacillus amyloliquefaciens XH7 chromosome, complete genomehypothetical protein9e-23109
NC_009142:2963831:297195929719592972738780Saccharopolyspora erythraea NRRL 2338, complete genomeATP-dependent DNA ligase9e-22106
NC_015573:997629:101154910115491012505957Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeDNA polymerase LigD, ligase domain-containing protein2e-21104
NC_004463:5110709:511634551163455116887543Bradyrhizobium japonicum USDA 110, complete genomesimilar to DNA ligase2e-21104
NC_004463:8401060:845029484502948450881588Bradyrhizobium japonicum USDA 110, complete genomesimilar to DNA ligase6e-21103
NC_016109:603829:606461606461606982522Kitasatospora setae KM-6054, complete genomehypothetical protein4e-21103
NC_006361:4521820:453794745379474538939993Nocardia farcinica IFM 10152, complete genomehypothetical protein2e-20101
NC_008271:140846:140846140846141817972Rhodococcus sp. RHA1 plasmid pRHL3, complete sequenceATP-dependent DNA ligase5e-20100
NC_009485:8138314:816666381666638167076414Bradyrhizobium sp. BTAi1 chromosome, complete genome5e-1997.1
NC_015859:1536439:1537450153745015387781329Corynebacterium variabile DSM 44702 chromosome, complete genomeDNA ligase9e-1996.3
NC_002678:6608697:662255766225576623438882Mesorhizobium loti MAFF303099, complete genomesimilar to ATP-dependent DNA ligase8e-1996.3
NC_013406:781308:791049791049791915867Paenibacillus sp. Y412MC10 chromosome, complete genomeATP-dependent DNA ligase1e-1895.5
NC_006322:1507411:150947515094751510284810Bacillus licheniformis ATCC 14580, complete genomeDNA ligase1e-1792.8
NC_014376:1472304:151207015120701512993924Clostridium saccharolyticum WM1 chromosome, complete genomeATP dependent DNA ligase9e-1789.4
NC_014830:3870000:389105638910563892018963Intrasporangium calvum DSM 43043 chromosome, complete genomeDNA primase small subunit2e-1688.6
NC_017955:3670670:3671121367112136721941074Modestobacter marinus, complete genomeATP-dependent DNA ligase8e-1686.3
NC_008095:7499255:7517372751737275189671596Myxococcus xanthus DK 1622, complete genomeDNA ligase, ATP-dependent3e-1377.8
NC_011881:1:6008600870421035Arthrobacter chlorophenolicus A6 plasmid pACHL02, completeATP dependent DNA ligase5e-1377
NC_016885:2091918:2091918209191820936721755Pyrobaculum oguniense TE7 chromosome, complete genomeDNA ligase I1e-1276.3
NC_016645:1909507:1928088192808819297791692Pyrobaculum sp. 1860 chromosome, complete genomeDNA ligase2e-1275.1
NC_017954:1:24924920511803Thermogladius cellulolyticus 1633 chromosome, complete genomeATP-dependent DNA ligase4e-1274.3
NC_009440:79263:1211851211851229811797Metallosphaera sedula DSM 5348 chromosome, complete genomeATP-dependent DNA ligase5e-1273.9
NC_017249:2572000:257928825792882579716429Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein4e-1170.5
NC_003413:1521080:1525737152573715274221686Pyrococcus furiosus DSM 3638, complete genomeDNA ligase7e-1170.1
NC_014830:3870000:3891964389196438933641401Intrasporangium calvum DSM 43043 chromosome, complete genomeATP dependent DNA ligase1e-1069.3
NC_009142:2692693:271027127102712710906636Saccharopolyspora erythraea NRRL 2338, complete genomeATP-dependent DNA ligase3e-1068.2
NC_014148:4037357:4055204405520440569581755Planctomyces limnophilus DSM 3776 chromosome, complete genomeATP dependent DNA ligase4e-1067.4
NC_000868:500249:5140035140035156821680Pyrococcus abyssi GE5, complete genomeDNA ligase2e-0965.5
NC_015216:2422758:242601124260112426916906Methanobacterium sp. AL-21 chromosome, complete genomeATP dependent DNA ligase3e-0964.7
NC_008699:2418722:242176224217622422718957Nocardioides sp. JS614, complete genomeATP dependent DNA ligase4e-0964.3
NC_014374:1072218:1177223117722311790461824Acidilobus saccharovorans 345-15 chromosome, complete genomeATP-dependent DNA ligase9e-0963.2
NC_014923:79370:7937079370809711602Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeATP dependent DNA ligase1e-0862.8
NC_011529:1375920:1390140139014013918281689Thermococcus onnurineus NA1, complete genomethermostable DNA ligase1e-0862.4
NC_002678:3701500:373418737341873734645459Mesorhizobium loti MAFF303099, complete genomesimilar to part of DNA ligase2e-0862
NC_015723:1998363:1996693199669319983661674Cupriavidus necator N-1 chromosome 2, complete sequenceDNA ligase Lig7e-0860.1
NC_008314:2686851:270451127045112704852342Ralstonia eutropha H16 chromosome 2, complete sequencefragment of ATP-dependent DNA ligase8e-0859.7
NC_005877:665092:6908376908376926091773Picrophilus torridus DSM 9790, complete genomeDNA ligase4e-0757.8
NC_014820:1057826:1077557107755710792901734Cenarchaeum symbiosum A, complete genomeATP-dependent DNA ligase2e-0655.1
NC_009515:616432:6257866257866274411656Methanobrevibacter smithii ATCC 35061, complete genomeATP-dependent DNA ligase, Cdc95e-0653.9
NC_013729:2287884:229293722929372293821885Kribbella flavida DSM 17836, complete genome6e-0653.5