Pre_GI: BLASTP Hits

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Query: NC_009953:3552738:3554526 Salinispora arenicola CNS-205 chromosome, complete genome

Start: 3554526, End: 3555413, Length: 888

Host Lineage: Salinispora arenicola; Salinispora; Micromonosporaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Found in marine sediment, this organism produces cancer-fighting compounds. Salinispora strains are commonly isolated from tropical marine sediment. Members of this genus produce branched hyphae and require media which contain seawater or sodium. A survey of the cultured species identified over 90 isolates which produce compounds that inhibited cancer cells. These organisms may be a new source of bioactive chemicals for use in disease and cancer treatments. Salinispora arenicola produces the bioactive compounds staurosporine and rifamycin which may be useful in the treatment of cancer.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013947:2113941:214394221439422144847906Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeRNA polymerase sigma-24 subunit, ECF subfamily5e-55214
NC_018681:2985078:300081030008103001703894Nocardia brasiliensis ATCC 700358 chromosome, complete genomeputative Sigma factor, sigma 70 type, group 4 (ECF)1e-53210
NC_013729:2157785:215778521577852158747963Kribbella flavida DSM 17836, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-48192
NC_013729:2813895:281389528138952814809915Kribbella flavida DSM 17836, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-46185
NC_016582:389729:408355408355409278924Streptomyces bingchenggensis BCW-1 chromosome, complete genomeECF subfamily RNA polymerase sigma factor8e-46184
NC_013729:1556922:157591315759131576869957Kribbella flavida DSM 17836, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-45181
NC_012988:4353000:435999343599934360955963Methylobacterium extorquens DM4, complete genomeRNA polymerase sigma factor2e-42172
NC_007777:2964500:298966629896662990505840Frankia sp. CcI3, complete genomesigma-241e-40166
NC_016582:389729:400537400537401454918Streptomyces bingchenggensis BCW-1 chromosome, complete genomeRNA polymerase sigma factor2e-39162
NC_017904:2641270:266192226619222662830909Mycobacterium sp. MOTT36Y chromosome, complete genomeECF family RNA polymerase sigma factor5e-39161
NC_011963:1979136:199767119976711998531861Rhodobacter sphaeroides KD131 chromosome 1, complete sequenceRNA polymerase sigma factor SigJ1e-38160
NC_015312:1191633:120925612092561210143888Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-37156
NC_011891:4450031:447536544753654476306942Anaeromyxobacter dehalogenans 2CP-1, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-36151
NC_009338:5161886:516373951637395164668930Mycobacterium gilvum PYR-GCK chromosome, complete genomeRNA polymerase sigma factor SigJ1e-35150
NC_016935:1365463:137867613786761379554879Paenibacillus mucilaginosus 3016 chromosome, complete genomeECF family RNA polymerase sigma factor5e-34144
NC_003888:6853107:686230768623076863275969Streptomyces coelicolor A3(2), complete genomesigma factor5e-34144
NC_015690:3941113:395186339518633952741879Paenibacillus mucilaginosus KNP414 chromosome, complete genomeECF family RNA polymerase sigma factor3e-33142
NC_020126:2216926:223261622326162233497882Myxococcus stipitatus DSM 14675, complete genomeECF family RNA polymerase sigma factor3e-32139
NC_013929:9038500:903995490399549040901948Streptomyces scabiei 87.22 chromosome, complete genomesigma factor5e-32138
NC_013093:1411882:141263314126331413622990Actinosynnema mirum DSM 43827, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-30133
NC_013595:4031947:403803340380334038914882Streptosporangium roseum DSM 43021, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-30132
NC_009921:3384116:338747933874793388363885Frankia sp. EAN1pec, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-30130
NC_010515:1618093:162184016218401622727888Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily1e-29130
NC_008543:2696377:271349727134972714384888Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily1e-29130
NC_008061:2548849:255260425526042553491888Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily1e-29130
NC_016109:3963189:396631339663133967236924Kitasatospora setae KM-6054, complete genomeputative RNA polymerase ECF subfamily sigma factor1e-28127
NC_006361:498305:511298511298512179882Nocardia farcinica IFM 10152, complete genomeputative sigma factor1e-26120
NC_014211:174694:178206178206179093888Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmidRNA polymerase, sigma-24 subunit, ECF subfamily6e-26118
NC_013510:5394432:542642554264255427285861Thermomonospora curvata DSM 43183, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-25115
NC_002944:2373873:239794423979442398834891Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein3e-24112
NC_013947:1011899:103481410348141035695882Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeRNA polymerase sigma-24 subunit, ECF subfamily6e-24111
NC_015656:381554:400378400378400803426Frankia symbiont of Datisca glomerata chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-1687.4
NC_012988:4353000:436675543667554367414660Methylobacterium extorquens DM4, complete genome8e-1684.7
NC_003888:7866148:788926678892667890168903Streptomyces coelicolor A3(2), complete genomeRNA polymerase sigma factor7e-1064.7
NC_016935:4038265:405515440551544056110957Paenibacillus mucilaginosus 3016 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit2e-0963.2
NC_015436:440033:442515442515443042528Spirochaeta coccoides DSM 17374 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0858.5
NC_016582:389729:399584399584400495912Streptomyces bingchenggensis BCW-1 chromosome, complete genomeRNA polymerase sigma factor6e-0858.5
NC_014815:5888934:589354558935455894543999Micromonospora sp. L5 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ecf subfamily9e-0857.8
NC_009614:1071548:108075110807511081263513Bacteroides vulgatus ATCC 8482 chromosome, complete genomeRNA polymerase ECF-type sigma factor4e-0755.8
NC_014666:4419693:4438717443871744400121296Frankia sp. EuI1c chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0653.5
NC_016109:327826:348659348659349585927Kitasatospora setae KM-6054, complete genomeputative RNA polymerase ECF subfamily sigma factor5e-0652