Pre_GI: BLASTP Hits

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Query: NC_009806:35990:52875 Kineococcus radiotolerans SRS30216 plasmid pKRAD01, complete

Start: 52875, End: 55094, Length: 2220

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous.Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery.This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013174:2624365:2624365262436526264282064Jonesia denitrificans DSM 20603, complete genomecopper resistance D domain protein3e-83310
NC_007333:1129826:1129826112982611319042079Thermobifida fusca YX, complete genomehypothetical protein1e-74281
NC_009953:188000:2001412001412021802040Salinispora arenicola CNS-205 chromosome, complete genomecopper resistance D domain-containing protein2e-73277
NC_013093:1213908:1241312124131212433752064Actinosynnema mirum DSM 43827, complete genomecopper resistance D domain protein1e-70268
NC_007164:622000:6460956460956484132319Corynebacterium jeikeium K411, complete genomehypothetical protein1e-63244
NC_016906:4123000:4143727414372741456611935Gordonia polyisoprenivorans VH2 chromosome, complete genomecytochrome c oxidase caa3 assembly factor-like protein9e-62238
NC_012704:1641684:1649517164951716517392223Corynebacterium kroppenstedtii DSM 44385, complete genomehypothetical protein5e-55216
NC_015859:2726414:2736432273643227383961965Corynebacterium variabile DSM 44702 chromosome, complete genomehypothetical protein2e-49198
NC_008726:3915979:3922513392251339244411929Mycobacterium vanbaalenii PYR-1, complete genomecopper resistance D domain protein2e-47191
NC_013441:2788806:2794162279416227961261965Gordonia bronchialis DSM 43247, complete genomeCytochrome c oxidase caa3-type, assembly factor CtaG-related protein3e-47190
NC_014158:73344:7711677116789571842Tsukamurella paurometabola DSM 20162 chromosome, complete genomeCytochrome c oxidase caa3-type, assembly factor CtaG-related protein1e-32142
NC_009342:135500:1589051589051609262022Corynebacterium glutamicum R chromosome, complete genomehypothetical protein2e-32141
NC_015671:255808:271179271179272162984Cellvibrio gilvus ATCC 13127 chromosome, complete genomeCytochrome c oxidase caa3-type, assembly factor CtaG-like protein2e-29131
NC_009338:2925286:296893029689302969925996Mycobacterium gilvum PYR-GCK chromosome, complete genomehypothetical protein5e-29130
NC_015312:61752:6766067660686911032Pseudonocardia dioxanivorans CB1190 chromosome, complete genomecytochrome c oxidase caa3-type, assembly factor CtaG-like protein7e-22106
NC_014158:2561441:257776525777652578745981Tsukamurella paurometabola DSM 20162 chromosome, complete genomeCytochrome c oxidase caa3-type, assembly factor CtaG-related protein5e-1377
NC_016906:4562874:457917045791704580105936Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative integral membrane protein8e-1376.3