Pre_GI: BLASTN Hits

Some Help

Query: NC_009800:4529504 Escherichia coli HS, complete genome

Start: 4529504, End: 4548099, Length: 18596

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
CP002516:41991334199133422817229040Escherichia coli KO11, complete genome019240BLASTN svgBLASTP svg
CP002185:47918114791811481779025980Escherichia coli W, complete genome019240BLASTN svgBLASTP svg
NC_011750:49780004978000500028022281Escherichia coli IAI39 chromosome, complete genome018530BLASTN svgBLASTP svg
NC_007613:44030704403070442929526226Shigella boydii Sb227, complete genome012730BLASTN svgBLASTP svg
NC_008253:48178644817864486276044897Escherichia coli 536, complete genome012010BLASTN svgBLASTP svg
NC_007946:48759974875997491969643700Escherichia coli UTI89, complete genome011990BLASTN svgBLASTP svg
NC_008563:49051864905186492360518420Escherichia coli APEC O1, complete genome011990BLASTN svgBLASTP svg
CU928160:4570498*4570498461509944602Escherichia coli IAI1 chromosome, complete genome011410BLASTN svgBLASTP svg
NC_011751:50705975070597508906918473Escherichia coli UMN026 chromosome, complete genome010990BLASTN svgBLASTP svg
AC_000091:45349354534935455904124107Escherichia coli W3110 DNA, complete genome010980BLASTN svgBLASTP svg
NC_000913:45282784528278455238424107Escherichia coli K12, complete genome010980BLASTN svgBLASTP svg
NC_002695:5381576*5381576540611824543Escherichia coli O157:H7 str. Sakai, complete genome010750BLASTN svgBLASTP svg
NC_010498:49306494930649495591925271Escherichia coli SMS-3-5, complete genome010520BLASTN svgBLASTP svg
NC_004431:51233255123325514909025766Escherichia coli CFT073, complete genome010460BLASTN svgBLASTP svg
NC_008258:4345400*4345400436989824499Shigella flexneri 5 str. 8401, complete genome010330BLASTN svgBLASTP svg
NC_004741:4364235*4364235438964325409Shigella flexneri 2a str. 2457T, complete genome010310BLASTN svgBLASTP svg
NC_004337:4374500*4374500439909924600Shigella flexneri 2a str. 301, complete genome010310BLASTN svgBLASTP svg
NC_009801:48826844882684490824525562Escherichia coli E24377A, complete genome09515BLASTN svgBLASTP svg
NC_010473:46303614630361465014819788Escherichia coli str. K-12 substr. DH10B, complete genome07598BLASTN svgBLASTP svg
AP010958:52728635272863529459921737Escherichia coli O103:H2 str. 12009 DNA, complete genome06605BLASTN svgBLASTP svg
CP002185:4750571*4750571477251221942Escherichia coli W, complete genome06052BLASTN svgBLASTP svg
NC_011750:4947500*4947500496714419645Escherichia coli IAI39 chromosome, complete genome05449BLASTN svgBLASTP svg
CP002797:46563274656327468071624390Escherichia coli NA114, complete genome05444BLASTN svgBLASTP svg
CP002797:4411763*4411763444042528663Escherichia coli NA114, complete genome04992BLASTN svgBLASTP svg
NC_009800:1254409*1254409127914624738Escherichia coli HS, complete genome02395BLASTN svgBLASTP svg
NC_009800:2788164*2788164280740719244Escherichia coli HS, complete genome02395BLASTN svgBLASTP svg
NC_009800:289000*28900031038921390Escherichia coli HS, complete genome02395BLASTN svgBLASTP svg
NC_009800:32011532011533924219128Escherichia coli HS, complete genome02395BLASTN svgBLASTP svg
NC_009800:349592*34959238017230581Escherichia coli HS, complete genome02395BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome02387BLASTN svgBLASTP svg
NC_009800:20493462049346207518725842Escherichia coli HS, complete genome02387BLASTN svgBLASTP svg
NC_014107:17117017117019899927830Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A,02379BLASTN svgBLASTP svg
NC_014121:36275883627588367459947012Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete02365BLASTN svgBLASTP svg
NC_004741:20097692009769203209922331Shigella flexneri 2a str. 2457T, complete genome02343BLASTN svgBLASTP svg
NC_014121:35538093553809358001526207Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete02335BLASTN svgBLASTP svg
NC_014121:398012*39801242358425573Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete02208BLASTN svgBLASTP svg
NC_014121:4299500*4299500433477235273Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete02206BLASTN svgBLASTP svg
NC_014121:2745097*2745097276822023124Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete02206BLASTN svgBLASTP svg
NC_007613:4217557*4217557425611838562Shigella boydii Sb227, complete genome02151BLASTN svgBLASTP svg
CP002797:4603787*4603787464340739621Escherichia coli NA114, complete genome02121BLASTN svgBLASTP svg
NC_004431:4270305*4270305431798947685Escherichia coli CFT073, complete genome01802BLASTN svgBLASTP svg
NC_010498:48991674899167492274523579Escherichia coli SMS-3-5, complete genome01786BLASTN svgBLASTP svg
NC_008563:47393334739333476356524233Escherichia coli APEC O1, complete genome01786BLASTN svgBLASTP svg
NC_013956:32733403273340330380130462Pantoea ananatis LMG 20103 chromosome, complete genome01746BLASTN svgBLASTP svg
NC_002695:53525545352554537663924086Escherichia coli O157:H7 str. Sakai, complete genome01594BLASTN svgBLASTP svg
NC_002655:53825575382557540664224086Escherichia coli O157:H7 EDL933, complete genome01594BLASTN svgBLASTP svg
NC_009778:17174581717458175914341686Enterobacter sakazakii ATCC BAA-894, complete genome01338BLASTN svgBLASTP svg
NC_014563:19307193073832519019Pantoea vagans C9-1 plasmid pPag2, complete sequence01215BLASTN svgBLASTP svg
NC_010694:63654*636548609922446Erwinia tasmaniensis, complete genome0977BLASTN svgBLASTP svg
NC_010473:24742924742927209924671Escherichia coli str. K-12 substr. DH10B, complete genome6e-161575BLASTN svgBLASTP svg
NC_000913:27207127207130179729727Escherichia coli K12, complete genome6e-161575BLASTN svgBLASTP svg
AC_000091:27332527332530179728473Escherichia coli W3110 DNA, complete genome6e-161575BLASTN svgBLASTP svg
NC_013716:3512950*3512950355955346604Citrobacter rodentium ICC168, complete genome2e-148533BLASTN svgBLASTP svg
NC_010067:3204682*3204682322388819207Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete4e-134486BLASTN svgBLASTP svg
NC_020063:4127161*4127161415360026440Enterobacteriaceae bacterium strain FGI 57, complete genome2e-124454BLASTN svgBLASTP svg
NC_010468:4252940*4252940428159928660Escherichia coli ATCC 8739, complete genome2e-117430BLASTN svgBLASTP svg
NC_006905:4638707*4638707467273934033Salmonella enterica subsp. enterica serovar Choleraesuis str2e-111410BLASTN svgBLASTP svg
NC_010102:4745949*4745949476837922431Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,4e-100373BLASTN svgBLASTP svg
NC_013716:50202045020204504905228849Citrobacter rodentium ICC168, complete genome4e-100373BLASTN svgBLASTP svg
NC_011080:47032664703266472876525500Salmonella enterica subsp. enterica serovar Newport str. SL254,1e-94355BLASTN svgBLASTP svg
NC_013716:27645502764550279838233833Citrobacter rodentium ICC168, complete genome1e-81311BLASTN svgBLASTP svg
NC_013716:33278813327881336492937049Citrobacter rodentium ICC168, complete genome2e-77297BLASTN svgBLASTP svg
NC_006511:2251022*2251022227421723196Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC2e-74287BLASTN svgBLASTP svg
NC_004631:23663352366335238728320949Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-74287BLASTN svgBLASTP svg
NC_003198:598000*59800061851020511Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-74287BLASTN svgBLASTP svg
NC_010067:3056774*3056774308172024947Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete5e-69270BLASTN svgBLASTP svg
NC_003198:4676536*4676536471603539500Salmonella enterica subsp. enterica serovar Typhi str. CT18,7e-68266BLASTN svgBLASTP svg
NC_004631:4661000*4661000468421223213Salmonella enterica subsp. enterica serovar Typhi Ty2, complete7e-68266BLASTN svgBLASTP svg
NC_010498:22783062278306230147623171Escherichia coli SMS-3-5, complete genome1e-66262BLASTN svgBLASTP svg
NC_011149:58889558889560977120877Salmonella enterica subsp. enterica serovar Agona str. SL483,7e-65256BLASTN svgBLASTP svg
NC_011083:654479*65447967531220834Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,7e-65256BLASTN svgBLASTP svg
NC_003197:60604860604862559319546Salmonella typhimurium LT2, complete genome7e-65256BLASTN svgBLASTP svg
NC_010067:2304313*2304313233059926287Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete3e-64254BLASTN svgBLASTP svg
NC_010102:24954412495441251396918529Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,4e-60240BLASTN svgBLASTP svg
NC_015663:2090442*2090442212127330832Enterobacter aerogenes KCTC 2190 chromosome, complete genome7e-59236BLASTN svgBLASTP svg
NC_006905:26300002630000265438924390Salmonella enterica subsp. enterica serovar Choleraesuis str1e-57232BLASTN svgBLASTP svg
NC_014121:677799*67779969989822100Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete1e-57232BLASTN svgBLASTP svg
NC_015968:511282*51128254179030509Enterobacter asburiae LF7a chromosome, complete genome4e-57230BLASTN svgBLASTP svg
NC_013956:3641368*3641368367779836431Pantoea ananatis LMG 20103 chromosome, complete genome4e-57230BLASTN svgBLASTP svg
NC_013508:876431*87643191551339083Edwardsiella tarda EIB202, complete genome6e-53216BLASTN svgBLASTP svg
NC_009648:5119271*5119271515776838498Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome2e-52214BLASTN svgBLASTP svg
NC_013850:4829455*4829455485950430050Klebsiella variicola At-22 chromosome, complete genome2e-49204BLASTN svgBLASTP svg
NC_013421:478586*47858650902930444Pectobacterium wasabiae WPP163, complete genome9e-46192BLASTN svgBLASTP svg
NC_020211:554736*55473659042335688Serratia marcescens WW4, complete genome4e-45190BLASTN svgBLASTP svg
NC_013956:595320*59532063373038411Pantoea ananatis LMG 20103 chromosome, complete genome4e-45190BLASTN svgBLASTP svg
NC_003198:3881221*3881221390454423324Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-44188BLASTN svgBLASTP svg
NC_012912:4194821*4194821421439319573Dickeya zeae Ech1591, complete genome2e-43184BLASTN svgBLASTP svg
NC_020064:521500*52150055828736788Serratia marcescens FGI94, complete genome9e-43182BLASTN svgBLASTP svg
NC_014500:443874*44387446959925726Dickeya dadantii 3937 chromosome, complete genome9e-43182BLASTN svgBLASTP svg
NC_013592:446092*44609246819222101Dickeya dadantii Ech586, complete genome9e-43182BLASTN svgBLASTP svg
NC_013282:551219*55121958904737829Cronobacter turicensis, complete genome3e-42180BLASTN svgBLASTP svg
NC_012880:4117376*4117376413569218317Dickeya dadantii Ech703, complete genome1e-41178BLASTN svgBLASTP svg
NC_009832:622969*62296965041627448Serratia proteamaculans 568, complete genome1e-41178BLASTN svgBLASTP svg
NC_015567:547500*54750057779630297Serratia sp. AS9 chromosome, complete genome5e-41176BLASTN svgBLASTP svg
NC_015566:547387*54738757761030224Serratia sp. AS12 chromosome, complete genome5e-41176BLASTN svgBLASTP svg
NC_013961:441719*44171947879337075Erwinia amylovora, complete genome8e-40172BLASTN svgBLASTP svg
NC_014562:3985500*3985500400317017671Pantoea vagans C9-1 chromosome, complete genome3e-39170BLASTN svgBLASTP svg
NC_013421:13978411397841141728819448Pectobacterium wasabiae WPP163, complete genome3e-39170BLASTN svgBLASTP svg
NC_010694:436500*43650046233725838Erwinia tasmaniensis, complete genome3e-39170BLASTN svgBLASTP svg
NC_010067:35381693538169356689828730Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete3e-36161BLASTN svgBLASTP svg
NC_013956:45500045500047503720038Pantoea ananatis LMG 20103 chromosome, complete genome5e-32147BLASTN svgBLASTP svg
NC_004547:442927*44292748635443428Erwinia carotovora subsp. atroseptica SCRI1043, complete genome5e-32147BLASTN svgBLASTP svg
NC_015061:4203767*4203767424223938473Rahnella sp. Y9602 chromosome, complete genome1e-29139BLASTN svgBLASTP svg
NC_008253:3941938*3941938399883856901Escherichia coli 536, complete genome7e-28133BLASTN svgBLASTP svg
NC_012917:32411963241196329451553320Pectobacterium carotovorum subsp. carotovorum PC1, complete genome3e-27131BLASTN svgBLASTP svg
NC_011149:3863913*3863913388509921187Salmonella enterica subsp. enterica serovar Agona str. SL483,4e-26127BLASTN svgBLASTP svg
NC_007712:3629358*3629358365546826111Sodalis glossinidius str. 'morsitans', complete genome2e-19105BLASTN svgBLASTP svg
NC_015663:18690001869000191219543196Enterobacter aerogenes KCTC 2190 chromosome, complete genome6e-19103BLASTN svgBLASTP svg
NC_020181:42194142194144800526065Enterobacter aerogenes EA1509E, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_009792:80833280833283532926998Citrobacter koseri ATCC BAA-895, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_008253:20567342056734207917122438Escherichia coli 536, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_007946:21554542155454218077025317Escherichia coli UTI89, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_004431:23042802304280233659932320Escherichia coli CFT073, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_013716:357928*35792840652048593Citrobacter rodentium ICC168, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_010694:2971170*2971170300344632277Erwinia tasmaniensis, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_009512:469000*46900049317124172Pseudomonas putida F1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_015733:3736104*37361043837697101594Pseudomonas putida S16 chromosome, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_013421:3752619*3752619377249719879Pectobacterium wasabiae WPP163, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_008253:334467*33446741611981653Escherichia coli 536, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_007946:289425*28942536040270978Escherichia coli UTI89, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_004431:364000*36400042492660927Escherichia coli CFT073, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_004631:4687270*4687270471022622957Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-1281.8BLASTN svgBLASTP svg
NC_014562:469154*46915449304023887Pantoea vagans C9-1 chromosome, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_011149:46774124677412471244835037Salmonella enterica subsp. enterica serovar Agona str. SL483,9e-1279.8BLASTN svgBLASTP svg
NC_004431:14439681443968146977025803Escherichia coli CFT073, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_007946:12805081280508130218721680Escherichia coli UTI89, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_008563:318993*31899336258343591Escherichia coli APEC O1, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_011750:19788011978801200896030160Escherichia coli IAI39 chromosome, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_011751:14460731446073147872932657Escherichia coli UMN026 chromosome, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_013508:1491945*1491945152068628742Edwardsiella tarda EIB202, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_011751:49925004992500501338720888Escherichia coli UMN026 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_010473:4596500*4596500461806621567Escherichia coli str. K-12 substr. DH10B, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_000913:44947734494773451470019928Escherichia coli K12, complete genome6e-1073.8BLASTN svgBLASTP svg
AC_000091:4501430*4501430452291521486Escherichia coli W3110 DNA, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_009832:2211154*2211154224619035037Serratia proteamaculans 568, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_009832:24600272460027248123021204Serratia proteamaculans 568, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_009832:426993*42699345559928607Serratia proteamaculans 568, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_009832:45647524564752461773352982Serratia proteamaculans 568, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_008782:19176341917634194559927966Acidovorax sp. JS42, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_009434:20065002006500203099424495Pseudomonas stutzeri A1501, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_009434:1580205*1580205160112420920Pseudomonas stutzeri A1501, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_008563:12178041217804124159923796Escherichia coli APEC O1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_006512:1722138*1722138174672424587Idiomarina loihiensis L2TR, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_006368:32119983211998323023918242Legionella pneumophila str. Paris, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_021066:839734*83973487672436991Raoultella ornithinolytica B6, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_020064:37904723790472381935828887Serratia marcescens FGI94, complete genome9e-0660BLASTN svgBLASTP svg
NC_015222:18430931843093186507521983Nitrosomonas sp. AL212 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_015222:1749553*1749553177272623174Nitrosomonas sp. AL212 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_010515:16784871678487173009951613Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence9e-0660BLASTN svgBLASTP svg
NC_010515:13750911375091141715142061Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence9e-0660BLASTN svgBLASTP svg
NC_010508:981377*981377100519623820Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence9e-0660BLASTN svgBLASTP svg
NC_010508:19806891980689200677326085Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence9e-0660BLASTN svgBLASTP svg
NC_007974:2048000*2048000209210744108Ralstonia metallidurans CH34 chromosome 2, complete sequence9e-0660BLASTN svgBLASTP svg