Pre_GI: BLASTN Hits

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Query: NC_009800:320115 Escherichia coli HS, complete genome

Start: 320115, End: 339242, Length: 19128

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007946:2593500*2593500261819924700Escherichia coli UTI89, complete genome03019BLASTN svgBLASTP svg
NC_011740:20721732072173211413741965Escherichia fergusonii ATCC 35469, complete genome02557BLASTN svgBLASTP svg
NC_009800:2788164*2788164280740719244Escherichia coli HS, complete genome02407BLASTN svgBLASTP svg
NC_009800:4529504*4529504454809918596Escherichia coli HS, complete genome02395BLASTN svgBLASTP svg
NC_009800:349592*34959238017230581Escherichia coli HS, complete genome02395BLASTN svgBLASTP svg
NC_009800:289000*28900031038921390Escherichia coli HS, complete genome02395BLASTN svgBLASTP svg
NC_009800:1254409*1254409127914624738Escherichia coli HS, complete genome02395BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome02391BLASTN svgBLASTP svg
NC_004337:4374500*4374500439909924600Shigella flexneri 2a str. 301, complete genome02389BLASTN svgBLASTP svg
NC_009800:20493462049346207518725842Escherichia coli HS, complete genome02389BLASTN svgBLASTP svg
NC_014107:17117017117019899927830Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A,02381BLASTN svgBLASTP svg
NC_011748:2655989*2655989268823232244Escherichia coli 55989, complete genome02371BLASTN svgBLASTP svg
CU928145:2655989*2655989268823232244Escherichia coli 55989 chromosome, complete genome02371BLASTN svgBLASTP svg
NC_014121:36275883627588367459947012Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete02369BLASTN svgBLASTP svg
NC_004741:20097692009769203209922331Shigella flexneri 2a str. 2457T, complete genome02347BLASTN svgBLASTP svg
NC_014121:35538093553809358001526207Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete02335BLASTN svgBLASTP svg
NC_008563:25658762565876258822422349Escherichia coli APEC O1, complete genome02315BLASTN svgBLASTP svg
NC_014121:2745097*2745097276822023124Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete02210BLASTN svgBLASTP svg
NC_014121:398012*39801242358425573Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete02204BLASTN svgBLASTP svg
NC_014121:4299500*4299500433477235273Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete02204BLASTN svgBLASTP svg
NC_010498:301000*30100034338442385Escherichia coli SMS-3-5, complete genome02016BLASTN svgBLASTP svg
NC_004431:4270305*4270305431798947685Escherichia coli CFT073, complete genome01802BLASTN svgBLASTP svg
CP002516:1475521*1475521149709321573Escherichia coli KO11, complete genome01794BLASTN svgBLASTP svg
CP002185:2608000*2608000263106823069Escherichia coli W, complete genome01794BLASTN svgBLASTP svg
NC_008563:47393334739333476356524233Escherichia coli APEC O1, complete genome01786BLASTN svgBLASTP svg
NC_013956:32733403273340330380130462Pantoea ananatis LMG 20103 chromosome, complete genome01739BLASTN svgBLASTP svg
NC_009778:17174581717458175914341686Enterobacter sakazakii ATCC BAA-894, complete genome01336BLASTN svgBLASTP svg
NC_014563:19307193073832519019Pantoea vagans C9-1 plasmid pPag2, complete sequence01217BLASTN svgBLASTP svg
NC_010694:63654*636548609922446Erwinia tasmaniensis, complete genome0969BLASTN svgBLASTP svg
NC_002695:3189425*3189425321610426680Escherichia coli O157:H7 str. Sakai, complete genome0704BLASTN svgBLASTP svg
NC_002655:3260500*3260500328246521966Escherichia coli O157:H7 EDL933, complete genome0704BLASTN svgBLASTP svg
NC_011083:40302240302245026847247Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,0678BLASTN svgBLASTP svg
NC_008258:4345400*4345400436989824499Shigella flexneri 5 str. 8401, complete genome0646BLASTN svgBLASTP svg
NC_004741:4364235*4364235438964325409Shigella flexneri 2a str. 2457T, complete genome0646BLASTN svgBLASTP svg
NC_010067:25297502529750259435464605Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete2e-179636BLASTN svgBLASTP svg
NC_006905:40115440115443134930196Salmonella enterica subsp. enterica serovar Choleraesuis str2e-167597BLASTN svgBLASTP svg
AC_000091:27332527332530179728473Escherichia coli W3110 DNA, complete genome6e-161575BLASTN svgBLASTP svg
NC_000913:27207127207130179729727Escherichia coli K12, complete genome6e-161575BLASTN svgBLASTP svg
NC_010473:24742924742927209924671Escherichia coli str. K-12 substr. DH10B, complete genome6e-161575BLASTN svgBLASTP svg
NC_010067:3204682*3204682322388819207Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete1e-134488BLASTN svgBLASTP svg
NC_011740:27374672737467275914021674Escherichia fergusonii ATCC 35469, complete genome2e-123450BLASTN svgBLASTP svg
NC_004741:310382*31038233778027399Shigella flexneri 2a str. 2457T, complete genome3e-113416BLASTN svgBLASTP svg
NC_004337:309833*30983333864628814Shigella flexneri 2a str. 301, complete genome3e-113416BLASTN svgBLASTP svg
NC_013716:50202045020204504905228849Citrobacter rodentium ICC168, complete genome5e-100373BLASTN svgBLASTP svg
NC_013716:27645502764550279838233833Citrobacter rodentium ICC168, complete genome1e-81311BLASTN svgBLASTP svg
NC_013716:33278813327881336492937049Citrobacter rodentium ICC168, complete genome9e-77295BLASTN svgBLASTP svg
NC_003198:598000*59800061851020511Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-74287BLASTN svgBLASTP svg
NC_004631:23663352366335238728320949Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-74287BLASTN svgBLASTP svg
NC_006511:2251022*2251022227421723196Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC2e-74287BLASTN svgBLASTP svg
NC_010498:22783062278306230147623171Escherichia coli SMS-3-5, complete genome1e-66262BLASTN svgBLASTP svg
NC_010067:2304313*2304313233059926287Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete2e-65258BLASTN svgBLASTP svg
NC_011149:58889558889560977120877Salmonella enterica subsp. enterica serovar Agona str. SL483,7e-65256BLASTN svgBLASTP svg
NC_011083:654479*65447967531220834Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,7e-65256BLASTN svgBLASTP svg
NC_003197:60604860604862559319546Salmonella typhimurium LT2, complete genome7e-65256BLASTN svgBLASTP svg
NC_010102:24954412495441251396918529Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,2e-59238BLASTN svgBLASTP svg
NC_006905:26300002630000265438924390Salmonella enterica subsp. enterica serovar Choleraesuis str1e-57232BLASTN svgBLASTP svg
NC_013956:3641368*3641368367779836431Pantoea ananatis LMG 20103 chromosome, complete genome4e-57230BLASTN svgBLASTP svg
NC_013508:876431*87643191551339083Edwardsiella tarda EIB202, complete genome1e-51212BLASTN svgBLASTP svg
NC_003198:3881221*3881221390454423324Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-44188BLASTN svgBLASTP svg
NC_010473:2548946*2548946258173732792Escherichia coli str. K-12 substr. DH10B, complete genome5e-38167BLASTN svgBLASTP svg
NC_000913:2455037*2455037248136126325Escherichia coli K12, complete genome5e-38167BLASTN svgBLASTP svg
AC_000091:24624612462461248878526325Escherichia coli W3110 DNA, complete genome5e-38167BLASTN svgBLASTP svg
NC_011750:2585015*2585015261198826974Escherichia coli IAI39 chromosome, complete genome2e-37165BLASTN svgBLASTP svg
NC_010067:35381693538169356689828730Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete5e-35157BLASTN svgBLASTP svg
NC_021066:839734*83973487672436991Raoultella ornithinolytica B6, complete genome1e-32149BLASTN svgBLASTP svg
NC_013956:45500045500047503720038Pantoea ananatis LMG 20103 chromosome, complete genome5e-32147BLASTN svgBLASTP svg
NC_008253:3941938*3941938399883856901Escherichia coli 536, complete genome7e-28133BLASTN svgBLASTP svg
NC_012917:32411963241196329451553320Pectobacterium carotovorum subsp. carotovorum PC1, complete genome3e-27131BLASTN svgBLASTP svg
NC_011149:3863913*3863913388509921187Salmonella enterica subsp. enterica serovar Agona str. SL483,5e-26127BLASTN svgBLASTP svg
CP002516:44744*447447499130248Escherichia coli KO11, complete genome7e-25123BLASTN svgBLASTP svg
CP002185:4035502*4035502406409928598Escherichia coli W, complete genome7e-25123BLASTN svgBLASTP svg
NC_010465:62348*6234810809945752Yersinia pseudotuberculosis YPIII, complete genome1e-23119BLASTN svgBLASTP svg
NC_014121:1101093*1101093113435733265Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete7e-22113BLASTN svgBLASTP svg
NC_015663:18690001869000191219543196Enterobacter aerogenes KCTC 2190 chromosome, complete genome7e-19103BLASTN svgBLASTP svg
NC_006511:24677632467763249158023818Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC7e-19103BLASTN svgBLASTP svg
NC_013956:595320*59532063373038411Pantoea ananatis LMG 20103 chromosome, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_014837:33014*330146044127428Pantoea sp. At-9b chromosome, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_002655:91965491965493956619913Escherichia coli O157:H7 EDL933, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_002695:91750991750994039822890Escherichia coli O157:H7 str. Sakai, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_004431:23042802304280233659932320Escherichia coli CFT073, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_004431:364000*36400042492660927Escherichia coli CFT073, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_007946:21554542155454218077025317Escherichia coli UTI89, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_007946:289425*28942536040270978Escherichia coli UTI89, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_008253:20567342056734207917122438Escherichia coli 536, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_008253:334467*33446741611981653Escherichia coli 536, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_008258:26980626980629518525380Shigella flexneri 5 str. 8401, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_009792:80833280833283532926998Citrobacter koseri ATCC BAA-895, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_013716:357928*35792840652048593Citrobacter rodentium ICC168, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_015224:32917363291736331359921864Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,4e-1797.6BLASTN svgBLASTP svg
NC_020181:42194142194144800526065Enterobacter aerogenes EA1509E, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_002655:30194030194032759925660Escherichia coli O157:H7 EDL933, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_002695:30193930193932873026792Escherichia coli O157:H7 str. Sakai, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_004631:2584244*2584244260559921356Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-1695.6BLASTN svgBLASTP svg
NC_007384:307013*30701333111524103Shigella sonnei Ss046, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_020063:3690308*3690308375363663329Enterobacteriaceae bacterium strain FGI 57, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_003197:36743036743038660919180Salmonella typhimurium LT2, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_008563:28713628713630584318708Escherichia coli APEC O1, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_009648:293052*29305232674733696Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_012779:91600091600093379317794Edwardsiella ictaluri 93-146, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_012912:10536181053618108982736210Dickeya zeae Ech1591, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_013282:923500*92350094659923100Cronobacter turicensis, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_020211:996497*996497103223335737Serratia marcescens WW4, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_021066:3028421*3028421305110422684Raoultella ornithinolytica B6, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_004547:3866439*3866439389314026702Erwinia carotovora subsp. atroseptica SCRI1043, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_006905:368942*36894239327424333Salmonella enterica subsp. enterica serovar Choleraesuis str3e-1591.7BLASTN svgBLASTP svg
NC_009778:29512072951207297908827882Enterobacter sakazakii ATCC BAA-894, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_011083:374000*37400039609922100Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,3e-1591.7BLASTN svgBLASTP svg
NC_011740:28599332859933288499725065Escherichia fergusonii ATCC 35469, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_012917:3684840*3684840370871823879Pectobacterium carotovorum subsp. carotovorum PC1, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_013421:3752619*3752619377249719879Pectobacterium wasabiae WPP163, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_014500:3744705*3744705376630221598Dickeya dadantii 3937 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_020260:3004500*3004500302796523466Cronobacter sakazakii Sp291, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_010694:2971170*2971170300344632277Erwinia tasmaniensis, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_009512:469000*46900049317124172Pseudomonas putida F1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_015733:3736104*37361043837697101594Pseudomonas putida S16 chromosome, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_015663:1356982*1356982138951032529Enterobacter aerogenes KCTC 2190 chromosome, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_012559:1663214*1663214168255819345Laribacter hongkongensis HLHK9, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_012917:31980003198000322168023681Pectobacterium carotovorum subsp. carotovorum PC1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_013592:32128343212834324883336000Dickeya dadantii Ech586, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014562:469154*46915449304023887Pantoea vagans C9-1 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_010067:3056774*3056774308172024947Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete4e-1177.8BLASTN svgBLASTP svg
NC_007712:28970002897000291516418165Sodalis glossinidius str. 'morsitans', complete genome4e-1177.8BLASTN svgBLASTP svg
NC_004431:14439681443968146977025803Escherichia coli CFT073, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_007946:12805081280508130218721680Escherichia coli UTI89, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_011750:19788011978801200896030160Escherichia coli IAI39 chromosome, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_011751:14460731446073147872932657Escherichia coli UMN026 chromosome, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_013508:1491945*1491945152068628742Edwardsiella tarda EIB202, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_015663:52532425253242527565022409Enterobacter aerogenes KCTC 2190 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_009832:2211154*2211154224619035037Serratia proteamaculans 568, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_009832:24600272460027248123021204Serratia proteamaculans 568, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_009832:426993*42699345559928607Serratia proteamaculans 568, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_009832:45647524564752461773352982Serratia proteamaculans 568, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_011751:643976*64397666569121716Escherichia coli UMN026 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_008782:19176341917634194559927966Acidovorax sp. JS42, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_009434:20065002006500203099424495Pseudomonas stutzeri A1501, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_009434:1580205*1580205160112420920Pseudomonas stutzeri A1501, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_008563:12178041217804124159923796Escherichia coli APEC O1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_007508:1446526*1446526147198625461Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_006512:1722138*1722138174672424587Idiomarina loihiensis L2TR, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_011083:3171171*3171171319192520755Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,1e-0765.9BLASTN svgBLASTP svg
NC_015572:4618467*4618467464627927813Methylomonas methanica MC09 chromosome, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_013850:1887556*1887556193878551230Klebsiella variicola At-22 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_012691:12503851250385127625725873Tolumonas auensis DSM 9187, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_010508:19806891980689200677326085Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence9e-0660BLASTN svgBLASTP svg
NC_010508:981377*981377100519623820Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence9e-0660BLASTN svgBLASTP svg
NC_010515:13750911375091141715142061Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence9e-0660BLASTN svgBLASTP svg
NC_010515:16784871678487173009951613Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence9e-0660BLASTN svgBLASTP svg
NC_015222:1749553*1749553177272623174Nitrosomonas sp. AL212 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_015222:18430931843093186507521983Nitrosomonas sp. AL212 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_007974:2048000*2048000209210744108Ralstonia metallidurans CH34 chromosome 2, complete sequence9e-0660BLASTN svgBLASTP svg