Pre_GI: BLASTN Hits

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Query: NC_009800:1589000 Escherichia coli HS, complete genome

Start: 1589000, End: 1614908, Length: 25909

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
AC_000091:15740001574000159980025801Escherichia coli W3110 DNA, complete genome049190BLASTN svgBLASTP svg
NC_007946:16320251632025165817126147Escherichia coli UTI89, complete genome027830BLASTN svgBLASTP svg
NC_007613:15330241533024155939726374Shigella boydii Sb227, complete genome027500BLASTN svgBLASTP svg
NC_008253:15348401534840155611921280Escherichia coli 536, complete genome025690BLASTN svgBLASTP svg
CP002516:23955782395578241927123694Escherichia coli KO11, complete genome023310BLASTN svgBLASTP svg
NC_002655:19664641966464198957123108Escherichia coli O157:H7 EDL933, complete genome022890BLASTN svgBLASTP svg
NC_007384:16968311696831171856121731Shigella sonnei Ss046, complete genome019420BLASTN svgBLASTP svg
NC_010658:15931371593137161115518019Shigella boydii CDC 3083-94, complete genome014990BLASTN svgBLASTP svg
NC_004741:17924421792442181107618635Shigella flexneri 2a str. 2457T, complete genome013640BLASTN svgBLASTP svg
CP002797:15910001591000160930018301Escherichia coli NA114, complete genome010860BLASTN svgBLASTP svg
NC_007606:15154031515403153810522703Shigella dysenteriae Sd197, complete genome09813BLASTN svgBLASTP svg
NC_008258:17509641750964177411123148Shigella flexneri 5 str. 8401, complete genome08046BLASTN svgBLASTP svg
NC_020063:22300002230000227048640487Enterobacteriaceae bacterium strain FGI 57, complete genome03441BLASTN svgBLASTP svg
NC_010498:16593281659328168149222165Escherichia coli SMS-3-5, complete genome028150BLASTN svgBLASTP svg
NC_011750:18495611849561187012520565Escherichia coli IAI39 chromosome, complete genome028490BLASTN svgBLASTP svg
AP010958:17116561711656173552123866Escherichia coli O103:H2 str. 12009 DNA, complete genome030190BLASTN svgBLASTP svg
NC_010468:23457812345781237145925679Escherichia coli ATCC 8739, complete genome049120BLASTN svgBLASTP svg
NC_000913:15704311570431159611025680Escherichia coli K12, complete genome048980BLASTN svgBLASTP svg
NC_011748:16847771684777170387419098Escherichia coli 55989, complete genome033320BLASTN svgBLASTP svg
CU928145:16847771684777170387419098Escherichia coli 55989 chromosome, complete genome033320BLASTN svgBLASTP svg
NC_002695:20918902091890211359921710Escherichia coli O157:H7 str. Sakai, complete genome033170BLASTN svgBLASTP svg
CP002185:16813271681327171027728951Escherichia coli W, complete genome033150BLASTN svgBLASTP svg
CU928160:15793751579375160831928945Escherichia coli IAI1 chromosome, complete genome033020BLASTN svgBLASTP svg
NC_011751:17703761770376179379823423Escherichia coli UMN026 chromosome, complete genome031820BLASTN svgBLASTP svg
NC_004431:17546271754627177809923473Escherichia coli CFT073, complete genome031660BLASTN svgBLASTP svg
NC_008563:16209431620943164109920157Escherichia coli APEC O1, complete genome031360BLASTN svgBLASTP svg
NC_010473:16610001661000168573524736Escherichia coli str. K-12 substr. DH10B, complete genome031310BLASTN svgBLASTP svg
NC_009801:16787901678790170320124412Escherichia coli E24377A, complete genome031300BLASTN svgBLASTP svg
NC_011740:15953811595381161679021410Escherichia fergusonii ATCC 35469, complete genome3e-151543BLASTN svgBLASTP svg
NC_009648:18825001882500190677624277Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome3e-49204BLASTN svgBLASTP svg
NC_013716:1138441*1138441116841529975Citrobacter rodentium ICC168, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_013716:16182491618249164307824830Citrobacter rodentium ICC168, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_020181:13442591344259136282518567Enterobacter aerogenes EA1509E, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015224:24735822473582249262519044Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,3e-0661.9BLASTN svgBLASTP svg
NC_012660:33203303320330335044730118Pseudomonas fluorescens SBW25 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004129:43333024333302435159918298Pseudomonas fluorescens Pf-5, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_003197:1611302*1611302163313721836Salmonella typhimurium LT2, complete genome3e-0661.9BLASTN svgBLASTP svg