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Query: NC_009800:3787320:3804101 Escherichia coli HS, complete genome

Start: 3804101, End: 3804784, Length: 684

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012967:3696877:371226437122643712947684Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein4e-129460
NC_012947:126596:131490131490132173684Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeinner membrane lipoprotein4e-129460
NC_010468:111504:116572116572117255684Escherichia coli ATCC 8739, complete genomeputative inner membrane lipoprotein2e-128457
CP002516:119935:124829124829125512684Escherichia coli KO11, complete genomeputative inner membrane lipoprotein5e-126449
CU928145:4131924:414946141494614150144684Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein; putative exported protein5e-126449
CP002185:3964500:398056139805613981244684Escherichia coli W, complete genomeputative inner membrane lipoprotein5e-126449
NC_011748:4131924:414946141494614150144684Escherichia coli 55989, complete genomeconserved hypothetical protein; putative exported protein5e-126449
NC_009801:4073968:409059740905974091280684Escherichia coli E24377A, complete genomeputative lipoprotein5e-126449
NC_011415:4006500:402263040226304023313684Escherichia coli SE11 chromosome, complete genomehypothetical protein5e-126449
NC_016902:119935:124829124829125512684Escherichia coli KO11FL chromosome, complete genomeputative inner membrane lipoprotein5e-126449
NC_004337:3590323:374437537443753744923549Shigella flexneri 2a str. 301, complete genomehypothetical protein8e-99359
NC_010498:3988351:401309240130924013775684Escherichia coli SMS-3-5, complete genomeputative lipoprotein2e-83308
NC_007606:3755155:376694137669413767534594Shigella dysenteriae Sd197, complete genomeputative lipoprotein4e-75280