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Query: NC_009800:3787320:3792868 Escherichia coli HS, complete genome

Start: 3792868, End: 3793710, Length: 843

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012967:3696877:370103137010313701873843Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein4e-161566
NC_012947:126596:142564142564143406843Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein4e-161566
NC_012759:3648500:365268636526863653528843Escherichia coli BW2952 chromosome, complete genomehypothetical protein4e-161566
NC_010468:111504:127646127646128488843Escherichia coli ATCC 8739, complete genomePBS lyase HEAT domain protein repeat-containing protein4e-161566
NC_009801:4073968:407950040795004080342843Escherichia coli E24377A, complete genomePBS lyase HEAT-like repeat protein4e-161566
CP002516:119935:135903135903136745843Escherichia coli KO11, complete genomePBS lyase HEAT domain protein repeat-containing protein5e-160563
CP002185:3964500:396932839693283970170843Escherichia coli W, complete genomelyase containing heat-repeat5e-160563
CP002185:794732:804021804021804863843Escherichia coli W, complete genomelyase containing heat-repeat5e-160563
NC_011415:4006500:401139740113974012239843Escherichia coli SE11 chromosome, complete genomehypothetical protein5e-160563
NC_016902:119935:135903135903136745843Escherichia coli KO11FL chromosome, complete genomePBS lyase HEAT domain-containing protein repeat-containing protein5e-160563
NC_013353:4707712:471655547165554717397843Escherichia coli O103:H2 str. 12009, complete genomelyase containing HEAT-repeat1e-159561
AP010958:4707712:471655547165554717397843Escherichia coli O103:H2 str. 12009 DNA, complete genomelyase containing HEAT-repeat1e-159561
NC_011748:4131924:413744141374414137959519Escherichia coli 55989, complete genome1e-92339
CU928145:4131924:413744141374414137959519Escherichia coli 55989 chromosome, complete genomefragment of lyase containing HEAT-repeat (part 1)1e-92339
NC_012125:1632150:164618316461831647049867Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein7e-51201
NC_011748:4131924:413882441388244139075252Escherichia coli 55989, complete genome4e-40164
CU928145:4131924:413882441388244139075252Escherichia coli 55989 chromosome, complete genomefragment of lyase containing HEAT-repeat (part 2)4e-40164
AC_000091:3995233:401628340162834016528246Escherichia coli W3110 DNA, complete genome5e-39161
NC_012947:248000:286356286356286601246Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein5e-39161
NC_012967:3549880:355457535545753554820246Escherichia coli B str. REL606 chromosome, complete genome5e-39161
NC_020126:1943092:195301119530111953820810Myxococcus stipitatus DSM 14675, complete genomehypothetical protein2e-1272.8
NC_017030:6912830:692054569205456921366822Corallococcus coralloides DSM 2259 chromosome, complete genomehypothetical protein3e-1272.4
NC_017095:1757935:1762758176275817674434686Fervidobacterium pennivorans DSM 9078 chromosome, complete genomeHEAT repeat-containing protein5e-0755.5
NC_008312:2798463:2821588282158828256194032Trichodesmium erythraeum IMS101, complete genomepeptidase C14, caspase catalytic subunit p209e-0754.3