Pre_GI: BLASTP Hits

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Query: NC_009800:3787320:3789161 Escherichia coli HS, complete genome

Start: 3789161, End: 3790552, Length: 1392

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010498:3988351:3991534399153439929251392Escherichia coli SMS-3-5, complete genomeL-seryl-tRNA selenium transferase0843
NC_012947:126596:1452341452341466251392Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeselenocysteine synthase0842
NC_010468:111504:1335761335761349671392Escherichia coli ATCC 8739, complete genomeL-seryl-tRNA(Sec) selenium transferase0842
NC_004337:3590323:3734155373415537355461392Shigella flexneri 2a str. 301, complete genomeselenocysteine synthase0840
NC_016902:119935:1423751423751437661392Escherichia coli KO11FL chromosome, complete genomeL-seryl-tRNA selenium transferase0838
CP002516:119935:1423751423751437661392Escherichia coli KO11, complete genomeL-seryl-tRNA selenium transferase0838
NC_013282:116649:1362901362901377141425Cronobacter turicensis, complete genomeL-seryl-tRNA(Sec) selenium transferase5e-180630
NC_012559:731859:7346817346817361141434Laribacter hongkongensis HLHK9, complete genomeSelenocysteine synthase3e-139495
NC_002663:1988000:1992896199289619942781383Pasteurella multocida subsp. multocida str. Pm70, complete genomeselenocysteine synthase3e-131468
NC_009053:1785447:1787279178727917886641386Actinobacillus pleuropneumoniae L20, complete genomeL-seryl-tRNA(Sec) selenium transferase7e-128457
NC_010939:1809446:1811278181127818126631386Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeL-seryl-tRNA(Sec) selenium transferase4e-127454
NC_016513:974402:9730119730119744051395Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeselenocysteine synthase1e-123443
NC_013416:668152:6667616667616681551395Aggregatibacter actinomycetemcomitans D11S-1, complete genomeL-seryl-tRNA selenium transferase1e-123443
NC_004347:103967:1142381142381156591422Shewanella oneidensis MR-1, complete genomeselenocysteine synthase1e-115416
NC_012721:1052883:1053832105383210552951464Burkholderia glumae BGR1 chromosome 2, complete genomeL-seryl-tRNA selenium transferase2e-108393
NC_010322:583842:6130836130836145101428Pseudomonas putida GB-1 chromosome, complete genomeselenocysteine synthase2e-107389
NC_015856:940625:9617809617809632371458Collimonas fungivorans Ter331 chromosome, complete genomeL-seryl-tRNA(Sec) selenium transferase2e-102373
NC_019902:831911:8609598609598624041446Thioalkalivibrio nitratireducens DSM 14787, complete genomeL-seryl-tRNA(Sec) selenium transferase4e-101368
NC_007650:832507:8334218334218349081488Burkholderia thailandensis E264 chromosome II, complete sequenceL-seryl-tRNA selenium transferase5e-99361
NC_014972:2659388:2669336266933626707811446Desulfobulbus propionicus DSM 2032 chromosome, complete genomeL-seryl-tRNA(Sec) selenium transferase1e-90333
NC_010718:1229355:1230422123042212318521431Natranaerobius thermophilus JW/NM-WN-LF, complete genomeL-seryl-tRNA(Sec) selenium transferase6e-90331
NC_003869:1812642:1816203181620318176001398Thermoanaerobacter tengcongensis MB4, complete genomeselenocysteine synthase4e-89328
NC_008751:607209:6109826109826124511470Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeL-seryl-tRNA(Sec) selenium transferase6e-88325
NC_014633:713285:7132857132857146731389Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceL-seryl-tRNA selenium transferase4e-87322
NC_014623:4535544:4555837455583745572371401Stigmatella aurantiaca DW4/3-1 chromosome, complete genomel-seryl-tRNA selenium transferase6e-87321
NC_016012:396910:4075114075114088991389Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeL-seryl-tRNA(Sec) selenium transferase1e-85317
NC_014844:1270618:1317169131716913185811413Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeL-seryl-tRNA selenium transferase7e-83308
NC_015873:790961:8094818094818108781398Megasphaera elsdenii DSM 20460, complete genomeL-seryl-tRNA(Sec) selenium transferase4e-82305
NC_016584:2244966:2255807225580722571891383Desulfosporosinus orientis DSM 765 chromosome, complete genomeseryl-tRNA(Sec) selenium transferase4e-79295
NC_000918:707801:7149287149287162861359Aquifex aeolicus VF5, complete genomeselenocysteine synthase4e-78292
NC_016148:1175999:1194571119457111959711401Thermovirga lienii DSM 17291 chromosome, complete genomeL-seryl-tRNA(Sec) selenium transferase1e-77290
NC_013894:672840:6967136967136980591347Thermocrinis albus DSM 14484 chromosome, complete genomeL-seryl-tRNA selenium transferase2e-67256
NC_014150:582093:5974345974345987891356Brachyspira murdochii DSM 12563 chromosome, complete genomeL-seryl-tRNA selenium transferase1e-56221
NC_016024:156000:1731221731221745551434Candidatus Chloracidobacterium thermophilum B chromosome chromosomeseryl-tRNA(sec) selenium transferase3e-56219
NC_009380:636000:6568396568396581341296Salinispora tropica CNB-440 chromosome, complete genomeselenocysteine synthase1e-55217
NC_012225:377441:3969463969463982921347Brachyspira hyodysenteriae WA1, complete genomeselenocysteine synthase4e-54212
NC_008570:2768795:2791890279189027933261437Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeL-seryl-tRNA selenium transferase3e-52206
NC_015424:2357600:2389841238984123913191479Aeromonas veronii B565 chromosome, complete genomeL-seryl-tRNA selenium transferase1e-51204
NC_017378:1489818:1493117149311714942771161Helicobacter pylori Puno120 chromosome, complete genomeselenocysteine synthase2e-35150
NC_017354:1465925:1465925146592514670851161Helicobacter pylori 52 chromosome, complete genomeselenocysteine synthase2e-35150
NC_017367:1505780:1508599150859915097591161Helicobacter pylori F57, complete genomeselenocysteine synthase7e-35148
NC_014555:1477934:1477934147793414790941161Helicobacter pylori PeCan4 chromosome, complete genomeselenocysteine synthase2e-34147
NC_011498:1571840:1571840157184015730121173Helicobacter pylori P12, complete genomeselenocysteine synthase2e-34147
NC_017371:1601452:1604318160431816054781161Helicobacter pylori Gambia94/24 chromosome, complete genomeselenocysteine synthase1e-33144
NC_018939:1583653:1587330158733015884901161Helicobacter pylori 26695 chromosome, complete genomeselenocysteine synthase2e-33144
NC_000915:1583967:1587307158730715884671161Helicobacter pylori 26695, complete genomeselenocysteine synthase2e-33144
NC_017365:1466500:1466515146651514676751161Helicobacter pylori F30, complete genomeselenocysteine synthase4e-33142
NC_014831:1843835:1869139186913918702541116Thermaerobacter marianensis DSM 12885 chromosome, complete genomepyridoxal phosphate-dependent enzyme2e-1067.8
NC_012125:3879917:3901775390177539028841110Salmonella enterica subsp. enterica serovar Paratyphi C straintransferase1e-0758.2
NC_016863:3905875:3929843392984339309521110Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative selenocysteine synthase2e-0757.4
NC_009792:4693152:4708751470875147098601110Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein9e-0755.5
NC_017200:4632000:4641168464116846422711104Bacillus thuringiensis serovar finitimus YBT-020 chromosome,putative pyridoxal phosphate-dependent enzyme1e-0655.1
NC_014335:4566692:4568453456845345695621110Bacillus cereus biovar anthracis str. CI chromosome, completeL-seryl-tRNA(Sec) selenium transferase1e-0654.7
NC_011772:4763542:4770607477060747717101104Bacillus cereus G9842, complete genomeputative pyridoxal phosphate-dependent enzyme1e-0654.7
NC_012472:4630485:4636889463688946379921104Bacillus cereus 03BB102, complete genomeputative pyridoxal phosphate-dependent enzyme1e-0654.7
NC_004193:3325612:3334303333430333353701068Oceanobacillus iheyensis HTE831, complete genomeL-seryl-tRNA selenium transferase2e-0654.3
NC_011658:4616933:4616933461693346180361104Bacillus cereus AH187 chromosome, complete genomeputative pyridoxal phosphate-dependent enzyme2e-0654.3
NC_016771:4569941:4570698457069845718011104Bacillus cereus NC7401, complete genomepyridoxal phosphate-dependent enzyme2e-0654.3
NC_011969:4556296:4558787455878745598901104Bacillus cereus Q1 chromosome, complete genomel-seryl-tRNA(sec) selenium transferase; selenocysteine synthase2e-0654.3
NC_003909:4614789:4613708461370846148111104Bacillus cereus ATCC 10987, complete genomepyridoxal phosphate-dependent enzyme, putative2e-0654.3
NC_016779:4588000:4590537459053745916401104Bacillus cereus F837/76 chromosome, complete genomeL-seryl-tRNA(Sec) selenium transferase-related protein2e-0653.9
NC_008600:4626464:4632871463287146339741104Bacillus thuringiensis str. Al Hakam, complete genomeselenocysteine synthase2e-0653.9
NC_014171:4681822:4683588468358846846311044Bacillus thuringiensis BMB171 chromosome, complete genomeL-seryl-tRNA(Sec) selenium transferase3e-0653.9
NC_011725:4799905:4799905479990548010081104Bacillus cereus B4264 chromosome, complete genomepyridoxal phosphate-dependent enzyme3e-0653.5
NC_004722:4767294:4768051476805147691541104Bacillus cereus ATCC 14579, complete genomeL-seryl-tRNA(Sec) selenium transferase4e-0653.1