Pre_GI: BLASTP Hits

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Query: NC_009800:2995958:3019906 Escherichia coli HS, complete genome

Start: 3019906, End: 3020538, Length: 633

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010468:906957:9184069184069195081103Escherichia coli ATCC 8739, complete genome6e-111399
CP002185:3167738:3190299319029931914081110Escherichia coli W, complete genome1e-109395
NC_009801:3175714:319726931972693198000732Escherichia coli E24377A, complete genomeFlhB/HrpN/YscU/SpaS family protein5e-109393
AP010958:3474077:349563434956343496365732Escherichia coli O103:H2 str. 12009 DNA, complete genome5e-109393
CP002516:903241:914668914668915399732Escherichia coli KO11, complete genometype III secretion exporter5e-109393
NC_011415:3217796:323935432393543240085732Escherichia coli SE11 chromosome, complete genomeputative type III secretion protein5e-109393
NC_013353:3474077:349563434956343496365732Escherichia coli O103:H2 str. 12009, complete genome5e-109393
NC_016902:903241:914668914668915399732Escherichia coli KO11FL chromosome, complete genometype III secretion exporter5e-109393
NC_011741:3030324:305188330518833052614732Escherichia coli IAI1 chromosome, complete genome2e-108391
CU928160:3030324:305188330518833052614732Escherichia coli IAI1 chromosome, complete genomefragment of Surface presentation of antigens protein (part 1)2e-108391
NC_013364:3552284:357384735738473574479633Escherichia coli O111:H- str. 11128, complete genome4e-108390
NC_013361:3867558:388911638891163889748633Escherichia coli O26:H11 str. 11368 chromosome, complete genome4e-108390
NC_002695:3702344:3722835372283537239561122Escherichia coli O157:H7 str. Sakai, complete genometype III secretion protein8e-108389
NC_002655:3769643:3790140379014037912611122Escherichia coli O157:H7 EDL933, complete genometype III secretion protein8e-108389
NC_011353:3805819:3827232382723238283531122Escherichia coli O157:H7 str. EC4115 chromosome, complete genomesurface presentation of antigens protein SpaS8e-108389
NC_013008:3761467:3781958378195837830791122Escherichia coli O157:H7 str. TW14359 chromosome, complete genomesurface presentation of antigens protein SpaS8e-108389
NC_011751:3285646:3307071330707133081831113Escherichia coli UMN026 chromosome, complete genomesurface presentation of antigens protein SpaS2e-107388
NC_011748:3196173:321800832180083218499492Escherichia coli 55989, complete genome4e-58224
CU928145:3196173:321800832180083218499492Escherichia coli 55989 chromosome, complete genomefragment of Surface presentation of antigens protein (part 1)4e-58224
NC_011274:2881306:2906997290699729080671071Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91surface presentation of antigens protein SpaS2e-35149
NC_011205:3050235:3075930307593030770001071Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853surface presentation of antigens protein SpaS2e-35149
NC_011094:2913500:2938729293872929397991071Salmonella enterica subsp. enterica serovar Schwarzengrund strsurface presentation of antigens protein SpaS2e-35149
NC_003197:3005842:3031533303153330326031071Salmonella typhimurium LT2, complete genometype III secretion protein2e-35149
NC_011080:2982346:3008037300803730091071071Salmonella enterica subsp. enterica serovar Newport str. SL254,surface presentation of antigens protein SpaS2e-35149
NC_010102:2967464:2994515299451529955851071Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-35149
NC_011294:2890500:2916193291619329172631071Salmonella enterica subsp. enterica serovar Enteritidis strsurface presentation of antigens protein SpaS2e-35149
NC_016810:3028421:3054109305410930551791071Salmonella enterica subsp. enterica serovar Typhimurium strtype III secretion system secretory apparatus2e-35149
NC_017046:3027161:3052849305284930539191071Salmonella enterica subsp. enterica serovar Typhimurium str. 798type III secretion system secretory apparatus2e-35149
NC_016863:2974333:3000023300002330010931071Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1surface presentation of antigens protein SpaS2e-35149
NC_016860:3029272:3054963305496330560331071Salmonella enterica subsp. enterica serovar Typhimurium strsurface presentation of antigens protein SpaS2e-35149
NC_016857:3028421:3054109305410930551791071Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74surface presentation of antigens protein SpaS2e-35149
NC_016856:3026426:3051770305177030528401071Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Ssurface presentation of antigens protein SpaS2e-35149
NC_016831:2867766:2893457289345728945271071Salmonella enterica subsp. enterica serovar Gallinarum/pullorumsecretory protein (associated with virulence)2e-35149
NC_011149:2912219:2940059294005929411291071Salmonella enterica subsp. enterica serovar Agona str. SL483,type III secretion protein2e-35148
NC_003198:2856596:2883533288353328846031071Salmonella enterica subsp. enterica serovar Typhi str. CT18,type III secretion protein2e-35148
NC_006511:2819128:2846069284606928471391071Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCtype III secretion protein2e-35148
NC_004631:2842453:2869390286939028704601071Salmonella enterica subsp. enterica serovar Typhi Ty2, completetype III secretion protein2e-35148
NC_011147:2814664:2841605284160528426751071Salmonella enterica subsp. enterica serovar Paratyphi A strsurface presentation of antigens protein SpaS2e-35148
NC_016832:2829767:2856689285668928577591071Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Surface presentation of antigens protein spaS2e-35148
NC_012125:2938519:2965444296544429665141071Salmonella enterica subsp. enterica serovar Paratyphi C strainsurface presentation of antigens protein SpaS4e-35147
NC_006905:2960260:2985061298506129861311071Salmonella enterica subsp. enterica serovar Choleraesuis strtype III secretion protein1e-34145
NC_015761:2726000:2751132275113227522021071Salmonella bongori NCTC 12419, complete genomevirulence associated secretory protein4e-34144
NC_013722:1689125:1725764172576417268401077Xanthomonas albilineans, complete genomeprobable xanthomonas secretion apparatus protein5e-32137
NC_010694:2971170:2989733298973329908481116Erwinia tasmaniensis, complete genomeexport protein for peptides using the type III secretion system5e-31134
NC_013961:851044:8743148743148754291116Erwinia amylovora, complete genomeSurface presentation of antigens protein SpaS1e-29129
NC_013971:2876733:2895871289587128969861116Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein1e-29129
NC_012214:2221702:2240691224069122417821092Erwinia pyrifoliae Ep1/96, complete genomeExport protein for peptides using the type III secretion system1e-27123
NC_013961:1622616:1649345164934516504361092Erwinia amylovora, complete genomeSurface presentation of antigens protein SpaS1e-24112
NC_013971:1660144:1686866168686616879631098Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein1e-24112
NC_010694:2138000:2153277215327721543861110Erwinia tasmaniensis, complete genomeexport protein for peptides using the type III secretion system1e-23109
CU928145:3196173:321773232177323217935204Escherichia coli 55989 chromosome, complete genomefragment of Surface presentation of antigens protein (part 2)3e-23108
NC_011748:3196173:321773232177323217935204Escherichia coli 55989, complete genome3e-23108
NC_020418:14965:2647326473275221050Morganella morganii subsp. morganii KT, complete genomeType III secretion inner membrane protein2e-2099
NC_014652:628435:6517616517616528611101Caldicellulosiruptor hydrothermalis 108 chromosome, completeflagellar biosynthetic protein flhb8e-1683.6
NC_003919:457482:4774604774604785331074Xanthomonas axonopodis pv. citri str. 306, complete genometype III secretion protein3e-1581.6
NC_003902:1416000:1437138143713814382111074Xanthomonas campestris pv. campestris str. ATCC 33913, completetype III secretion system protein HrcU2e-1479.3
NC_005126:4423964:4439952443995244410071056Photorhabdus luminescens subsp. laumondii TTO1, complete genomeType III secretion component protein SctU3e-1478.2
NC_012962:1189021:1193517119351711945691053Photorhabdus asymbiotica, complete genometype iii secretion component protein sctu4e-1477.8
NC_006177:3192500:3210394321039432114791086Symbiobacterium thermophilum IAM 14863, complete genomeflagellar biosynthesis protein5e-1477.8
NC_007645:3343815:3356886335688633579231038Hahella chejuensis KCTC 2396, complete genomeType III secretory pathway, component EscU1e-1376.6
NC_009253:2615777:2615777261577726168411065Desulfotomaculum reducens MI-1 chromosome, complete genomeflagellar biosynthetic protein FlhB1e-1376.3
NC_009698:2649453:2649453264945326512821830Clostridium botulinum A str. Hall chromosome, complete genomebifunctional flagellar biosynthesis protein FliR/FlhB2e-1375.9
NC_010520:2860960:2860960286096028627891830Clostridium botulinum A3 str. Loch Maree, complete genomeflagellar biosynthetic protein FliR/FlhB2e-1375.9
NC_009012:574145:5961915961915973691179Clostridium thermocellum ATCC 27405, complete genomeflagellar biosynthetic protein FlhB1e-1273.6
NC_012962:3030726:3050189305018930513401152Photorhabdus asymbiotica, complete genomeflagellar biosynthetic protein flhb1e-1273.2
NC_008346:983816:9856939856939868021110Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeflagellar biosynthesis/type III secretory pathway protein1e-1272.8
NC_021182:2883716:2896408289640828982371830Clostridium pasteurianum BC1, complete genomeflagellar biosynthetic protein FlhB/flagellar biosynthetic protein FliR2e-1272.4
NC_008593:1103293:1122918112291811246451728Clostridium novyi NT, complete genomeflagellar biosynthetic protein FlhB4e-1271.2
NC_018664:1663324:1667237166723716683221086Clostridium acidurici 9a chromosome, complete genomeflagellar biosynthetic protein FlhB1e-1169.7
NC_014377:1089894:1089894108989410909671074Thermosediminibacter oceani DSM 16646 chromosome, complete genomeflagellar biosynthetic protein FlhB1e-1169.7
NC_010067:1507823:1515302151530215163571056Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-1169.3
NC_016894:2931213:2934139293413929352061068Acetobacterium woodii DSM 1030 chromosome, complete genomeflagellar biosynthesis protein FlhB22e-1169.3
NC_008011:663958:6699666699666710481083Lawsonia intracellularis PHE/MN1-00, complete genometranslocation protein in type III secretion2e-1168.9
NC_012559:731859:7525057525057536741170Laribacter hongkongensis HLHK9, complete genomeFlhB14e-1168.2
NC_021184:2238500:2256222225622222572921071Desulfotomaculum gibsoniae DSM 7213, complete genomeflagellar biosynthetic protein FlhB8e-1167
NC_010723:833870:8508728508728527041833Clostridium botulinum E3 str. Alaska E43, complete genomeflagellar biosynthetic protein2e-1066.2
NC_014328:1135854:1144086114408611459061821Clostridium ljungdahlii ATCC 49587 chromosome, complete genomebifunctional flagellar biosynthesis proteins FliR/FlhB3e-1065.5
NC_009617:4911595:4913794491379449156351842Clostridium beijerinckii NCIMB 8052 chromosome, complete genomebifunctional flagellar biosynthesis protein FliR/FlhB4e-1064.7
NC_007759:1356439:1359390135939013604541065Syntrophus aciditrophicus SB, complete genomeflagellar biosynthesis pathway component4e-1064.7
NC_003197:1471349:1500431150043115014891059Salmonella typhimurium LT2, complete genometype III secretion system apparatus protein4e-1064.7
NC_010102:1616530:1620424162042416214821059Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-1064.7
NC_016856:1481325:1510407151040715114651059Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Ssecretion system apparatus protein SsaU4e-1064.7
NC_016860:1469066:1498118149811814991761059Salmonella enterica subsp. enterica serovar Typhimurium strsecretion system apparatus protein SsaU4e-1064.7
NC_016863:1429516:1458598145859814596561059Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1secretion system apparatus protein SsaU4e-1064.7
NC_003198:1621347:1625241162524116262991059Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative type III secretion protein6e-1064.3
NC_011149:1710601:1714495171449517155531059Salmonella enterica subsp. enterica serovar Agona str. SL483,secretion system apparatus protein SsaU6e-1064.3
NC_006511:1506915:1510809151080915118671059Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative type III secretion protein6e-1064.3
NC_011147:1502096:1505990150599015070481059Salmonella enterica subsp. enterica serovar Paratyphi A strsecretion system apparatus protein SsaU6e-1064.3
NC_011274:1763676:1767570176757017686281059Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91secretion system apparatus protein SsaU6e-1064.3
NC_011294:1723852:1727746172774617288041059Salmonella enterica subsp. enterica serovar Enteritidis strsecretion system apparatus protein SsaU6e-1064.3
NC_016831:1236786:1265804126580412668621059Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative type III secretion protein6e-1064.3
NC_011205:1852665:1856559185655918576171059Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853secretion system apparatus protein SsaU6e-1064.3
NC_011094:1435347:1464335146433514653931059Salmonella enterica subsp. enterica serovar Schwarzengrund strsecretion system apparatus protein SsaU6e-1064.3
NC_014500:3071764:3077599307759930787501152Dickeya dadantii 3937 chromosome, complete genomeflagellar biosynthesis protein flhB6e-1064.3
NC_012791:2386000:2405796240579624068931098Variovorax paradoxus S110 chromosome 1, complete genometype III secretion exporter8e-1063.9
NC_011080:1470794:1499871149987115009291059Salmonella enterica subsp. enterica serovar Newport str. SL254,secretion system apparatus protein SsaU6e-1063.9
NC_012125:2360815:2364709236470923657671059Salmonella enterica subsp. enterica serovar Paratyphi C strainsecretion system apparatus protein SsaU9e-1063.5
NC_007492:1735595:1738329173832917394681140Pseudomonas fluorescens PfO-1, complete genomeflagellar biosynthesis protein1e-0963.5
NC_017249:8283701:8282667828266782837041038Bradyrhizobium japonicum USDA 6, complete genomeRhcU protein1e-0963.2
NC_019940:293476:3017023017023028381137Thioflavicoccus mobilis 8321 chromosome, complete genomeflagellar biosynthetic protein FlhB1e-0963.2
NC_015391:2059191:2075318207531820763851068Carnobacterium sp. 17-4 chromosome, complete genomeflagellar biosynthesis protein FlhB3e-0961.6
NC_012660:819381:8221118221118232081098Pseudomonas fluorescens SBW25 chromosome, complete genomeputative type III secretion protein4e-0961.6
NC_008576:4701930:1156411564126311068Magnetococcus sp. MC-1, complete genomeflagellar biosynthetic protein FlhB5e-0961.2
NC_014366:1814000:1835721183572118368481128Gamma proteobacterium HdN1, complete genomeFlagellar biosynthetic protein5e-0961.2
NC_008435:1215437:1311015131101513120911077Rhodopseudomonas palustris BisA53, complete genomeflagellar biosynthetic protein FlhB5e-0961.2
NC_010674:858397:8725658725658744061842Clostridium botulinum B str. Eklund 17B, complete genomeflagellar biosynthetic protein6e-0960.8
NC_020911:2921925:2940865294086529420131149Octadecabacter antarcticus 307, complete genomeFlhB-like type III secretion exporter family protein6e-0960.8
NC_012440:659646:6631236631236641721050Persephonella marina EX-H1, complete genomeflagellar biosynthetic protein FlhB2e-0859.3
NC_009664:533021:5352985352985363801083Kineococcus radiotolerans SRS30216, complete genometype III secretion exporter2e-0858.9
NC_012880:1765920:1803109180310918042601152Dickeya dadantii Ech703, complete genomeflagellar biosynthetic protein FlhB3e-0858.5
NC_010634:2004653:2019776201977620209361161Yersinia pseudotuberculosis PB1/+, complete genomeflagellar biosynthetic protein FlhB3e-0858.5
NC_009792:2688747:2689520268952026906531134Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein6e-0857.4
NC_003143:741169:7688777688777700101134Yersinia pestis CO92, complete genomeflagellar biosynthesis protein2e-0756.2
NC_008149:650706:6777406777406788731134Yersinia pestis Nepal516, complete genomeflagellar assembly protein2e-0756.2
NC_005810:3333000:3360079336007933612121134Yersinia pestis biovar Microtus str. 91001, complete genomeflagellar biosynthesis protein FlhB2e-0756.2
NC_009381:522731:5497175497175508501134Yersinia pestis Pestoides F chromosome, complete genomeflagellar biosynthesis protein FlhB2e-0756.2
NC_011772:1575674:1597992159799215990381047Bacillus cereus G9842, complete genomeputative flagellar biosynthetic protein FlhB2e-0756.2
NC_016901:2661971:2662793266279326638421050Shewanella baltica OS678 chromosome, complete genometype III secretion protein, YscU/HrpY family2e-0755.8
NC_009997:2699644:2702876270287627039251050Shewanella baltica OS195, complete genometype III secretion protein, YscU/HrpY family2e-0755.8
NC_002947:4931476:4945437494543749465791143Pseudomonas putida KT2440, complete genomeflagellar biosynthesis protein5e-0754.7
NC_014562:1772842:1796553179655317977041152Pantoea vagans C9-1 chromosome, complete genomeFlagellar biosynthetic protein flhB9e-0753.5
NC_004129:1848701:1854568185456818557041137Pseudomonas fluorescens Pf-5, complete genomeflagellar biosynthesis protein9e-0753.5
NC_014926:1381152:1409743140974314107861044Thermovibrio ammonificans HB-1 chromosome, complete genomeflagellar biosynthetic protein FlhB2e-0652.8
NC_004344:26828:4092440924420811158Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein2e-0652.4
NC_015500:1337180:1357603135760313587391137Treponema brennaborense DSM 12168 chromosome, complete genomeflagellar biosynthetic protein FlhB2e-0652.4
NC_012778:841934:8419348419348430521119Eubacterium eligens ATCC 27750, complete genomeflagellar biosynthetic protein FlhB2e-0652.4
NC_013508:1289159:1327342132734213286641323Edwardsiella tarda EIB202, complete genomeflagellar biosynthetic protein3e-0652
NC_004605:1385444:1422554142255414236121059Vibrio parahaemolyticus RIMD 2210633 chromosome II, completeputative type III secretion system EscU protein3e-0651.6
NC_011126:555483:5898115898115908721062Hydrogenobaculum sp. Y04AAS1, complete genomeflagellar biosynthetic protein FlhB4e-0651.6
NC_010501:4080937:4094735409473540958771143Pseudomonas putida W619, complete genomeflagellar biosynthetic protein FlhB9e-0650.4