Pre_GI: BLASTP Hits

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Query: NC_009800:2995958:3009110 Escherichia coli HS, complete genome

Start: 3009110, End: 3009556, Length: 447

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010468:906957:929467929467929913447Escherichia coli ATCC 8739, complete genomehypothetical protein8e-67251
AC_000091:2976293:298921029892102989656447Escherichia coli W3110 DNA, complete genomehypothetical protein3e-66249
NC_000913:2975659:298857629885762989022447Escherichia coli K12, complete genomehypothetical protein3e-66249
NC_010473:3069529:308244630824463082892447Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein3e-66249
NC_016822:3282654:329662032966203297057438Shigella sonnei 53G, complete genomehypothetical protein7e-57218
NC_007384:3151344:316388331638833164320438Shigella sonnei Ss046, complete genomehypothetical protein7e-57218
NC_011748:3196173:320770632077063208143438Escherichia coli 55989, complete genomehypothetical protein3e-56216
CU928145:3196173:320770632077063208143438Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein3e-56216
NC_013361:3867558:387909138790913879528438Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein3e-56216
NC_013364:3552284:356382335638233564260438Escherichia coli O111:H- str. 11128, complete genomehypothetical protein3e-56216
AP010958:3474077:348560934856093486046438Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein4e-55213
NC_013353:3474077:348560934856093486046438Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein4e-55213
NC_002655:3769643:378049137804913780982492Escherichia coli O157:H7 EDL933, complete genomehypothetical protein4e-55213
NC_002695:3702344:371319237131923713683492Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein4e-55213
NC_011353:3805819:381758938175893818080492Escherichia coli O157:H7 str. EC4115 chromosome, complete genome4e-55213
NC_013008:3761467:377231537723153772806492Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein4e-55213
NC_013941:3540420:355126735512673551758492Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein4e-55213
CU928160:3030324:304185730418573042294438Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein4e-55213
NC_011741:3030324:304185730418573042294438Escherichia coli IAI1 chromosome, complete genomehypothetical protein4e-55213
CP002185:3167738:318065431806543181091438Escherichia coli W, complete genome3e-55213
CP002516:903241:924985924985925422438Escherichia coli KO11, complete genomehypothetical protein3e-55213
NC_011415:3217796:322932932293293229766438Escherichia coli SE11 chromosome, complete genomehypothetical protein3e-55213
NC_016902:903241:924985924985925422438Escherichia coli KO11FL chromosome, complete genomehypothetical protein3e-55213
NC_011751:3285646:329741732974173297908492Escherichia coli UMN026 chromosome, complete genomehypothetical protein7e-53205
NC_011750:3407500:341932334193233419760438Escherichia coli IAI39 chromosome, complete genomehypothetical protein4e-52202