Pre_GI: BLASTP Hits

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Query: NC_009800:289000:300820 Escherichia coli HS, complete genome

Start: 300820, End: 301125, Length: 306

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013941:3300000:330358633035863303921336Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein6e-52202
NC_013361:3112023:313081031308103131115306Escherichia coli O26:H11 str. 11368 chromosome, complete genomeearly gene regulator N1e-51201
NC_012947:3015985:302259930225993022898300Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completephage regulatory protein N1e-31135
NC_007946:2625461:263115726311572631456300Escherichia coli UTI89, complete genomeprobable phage regulatory protein N8e-1269.3
NC_014306:3524980:357159435715943571881288Erwinia billingiae Eb661, complete genomePhage transcription antitermination protein4e-0856.6
NC_013361:3287671:329656732965673296839273Escherichia coli O26:H11 str. 11368 chromosome, complete genomeantitermination protein N2e-0754.7
NC_012125:1330066:134402713440271344365339Salmonella enterica subsp. enterica serovar Paratyphi C strainbacteriophage ST64T protein 245e-0650.1