Pre_GI: BLASTP Hits

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Query: NC_009800:2889928:2899863 Escherichia coli HS, complete genome

Start: 2899863, End: 2901371, Length: 1509

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010468:1029471:1039261103926110407691509Escherichia coli ATCC 8739, complete genomeCRISPR-associated protein, Cse1 family0993
NC_012759:2757826:2766464276646427679721509Escherichia coli BW2952 chromosome, complete genomehypothetical protein0991
NC_000913:2873443:2880652288065228821601509Escherichia coli K12, complete genomehypothetical protein0991
AC_000091:2872000:2881286288128628827941509Escherichia coli W3110 DNA, complete genomehypothetical protein0991
NC_010473:2963951:2973194297319429747021509Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein0991
NC_002939:1505701:1514972151497215164921521Geobacter sulfurreducens PCA, complete genomehypothetical protein3e-143508
NC_013851:759500:7670597670597684831425Allochromatium vinosum DSM 180 chromosome, complete genomeCRISPR-associated protein, Cse1 family9e-93341